BAC Information

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BAC

Clone NameMSMg01-058M16
Chromosome2 (Build37)
Map Location 144,586,577 - 144,586,770
singlet/doubletsinglet
Overlap geneDtd1
Upstream genePcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561
Downstream gene1700010M22Rik, Slc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058M16.T7 (MSMg01no058_m16.b1)MSMg01-058M16.TJ (MSMg01no058_m16.g1)
ACCAG285622AG285623
length695705
length of high quality
(start - end)
447 (75 - 521)194 (126 - 319)
definitionCHROMAT_FILE: MSMg01no058_m16.b1 PHD_FILE: MSMg01no058_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:08 2005CHROMAT_FILE: MSMg01no058_m16.g1 PHD_FILE: MSMg01no058_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXATTTTCAGACGAGGAGCCGC
GGAATTCTTTTTTCCCAGAAAAAGTTTCATCATGGAGGTGTTCCCTATGC
TTGGTATTTAGTCAGTGTTCTATTGCTGAGAAAAGATGCTATGACCTATC
TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTTTAAAGCTATTATGAATGAGATTGTTTTGCTGATTTCTG
TTTCGGTATGCTTGTAAAGGAAGGCCACTGATTTTCATATGCTAATTTTG
TATCTTGTCACTTTGTTGATTGTATTAATCTAAATGTTTTCTGCTGAAAT
ATTTAAGGTCTATTATGCATAGAATCATATTGTCTGCAAGTAGATTCTAT
GACATTGTTCTTTTTTACTTGTAAGCCTTTTATTTCCTTCTCTTGCCTTA
CTGCTCTAGACAAGCCTTCCACTACTGTGTTGAATACTAGTGGAGACAGA
GATGGTTGACACCTTTGTCGTCTTCGTGGCCTCAGTGGAAAGTTTTTCCT
CACTTAATATAGCGCTGACTGCAGCCCTTACGTTGAGGTATGATGTTCTT
CTGAGTTACTTCACGATCTTTCTTTTTTTCCTTTTCCTTCTCGGGACAGG
GTTCCTCAGCAGCTCTGGCTGTCCTGGAACTTATTCTGGAAAACA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCACAAGGAGGTCCATACTAAATTTGTGATTCCCGA
CTCAAAGAAACAGCACATGGACCCTCGGAGGTTTTAGTCTAAAAGTTCTC
CGAGCTTTTAGATATGCATTAAGGCAGAAGGACCTCACACAGCACCTGTC
TTGAACAGCTAGAAGCTAAGTGTGCCTTCAGAGTTGACCTTGCTATGATG
GCGTTCCAATGGGCTTAATCATGTGTCAGCATTAATACCACAAATAGCAT
GCTCTCAACACACTGCAGATTTCTCTGACAAGCAGCAGACACTGTCCTGG
CTGAAAACTGTAGTTCCCTGTGGGACTGTCGGATGGATGCTGCTGTTTCT
AACCTGTTTGTTGTCCTTTTCCACATCATTTCCTCCACAACTATAGAAAC
ACCTAGGCACTGGTTGCTGGCCATCACCTAGGAGTGCCTGTAGATAATGA
TGTTATGTGTTAGAAAGCTGTACCACCACCACCACAACCCAACAGCCTTT
TGGACTACCCAGCTTCCTCCAGATGTGCTAGTGCCTTTTTATTGCTTTCA
AACACCAAGGGAGTGAGGAACATCTTCTATGAGGCCAATGCTGGACCTGA
ACCTAGGTATCCTTCTACAGCCTATTCAAAAATAGAATGTGGTGTCTTGA
AATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_m16.g1 MSMg01no058_m16.g1 CHROMAT_FILE:
MSMg01no058_m16.g1 PHD_FILE: MSMg01no058_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:08 2005
         (194 letters)



>mm_chr2_144586377_144586970
          Length = 594

 Score =  337 bits (174), Expect = 4e-97
 Identities = 189/194 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cggaggttttagtctaaaagttctccgagcttttagatatgcattaaggcagaaggacct 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 394 cggaggttttagtctaaaagttctccgagcttttaggtatgcattaaggcagaaggacct 335

                                                                       
Query: 61  cacacagcacctgtcttgaacagctagaagctaagtgtgccttcagagttgaccttgcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cacacagcacctgtcttgaacagctagaagctaagtgtgccttcagagttgaccttgcta 275

                                                                       
Query: 121 tgatggcgttccaatgggcttaatcatgtgtcagcattaataccacaaatagcatgctct 180
           |||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 274 tgatggcgtttcaatggacttaatcatgtgtcagcattaataccacaaataacatgctct 215

                         
Query: 181 caacacactgcaga 194
           |||||||| |||||
Sbjct: 214 caacacaccgcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)