Query= MSMg01no058_n04.b1 MSMg01no058_n04.b1 CHROMAT_FILE:
MSMg01no058_n04.b1 PHD_FILE: MSMg01no058_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:10 2005
(572 letters)
>mm_chr2_115340955_115341926
Length = 972
Score = 1069 bits (553), Expect = 0.0
Identities = 568/573 (99%), Gaps = 2/573 (0%)
Strand = Plus / Plus
Query: 1 ttaaaag-agaaaaaaaaagggcagcaatctatttttgattaagttctgtgtaccagaat 59
||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaaagcag-aaaaaaaaggccagcaatctatttttgattaagttctgtgtaccagaat 259
Query: 60 actataagctatatataactgttatgttgacaaatacaaacatgattctattttctgcta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 actataagctatatataactgttatgttgacaaatacaaacatgattctattttctgcta 319
Query: 120 cttagagtgaagaaaagtttatgccagaaaaaaagcaaaaacaaaacaaagcaatgcact 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cttagagtgaagaaaagtttatgccagaaaaaaagcaaaaacaaaacaaagcaatgcact 379
Query: 180 ataaaacccatcagatggaacatactaaatgagcaaacccggcattggctcagcaaagcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ataaaacccatcagatggaacatactaaatgagcaaacccggcattggctcagcaaagcc 439
Query: 240 cagtgtgacgagggtcttacccatttcaacagtcacagaatataaccagtaaccagaacg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagtgtgacgagggtcttacccatttcaacagtcacagaatataaccagtaaccagaacg 499
Query: 300 ttgatcacaactagtcctgaaaacggggagtggagtgccggcacaggcccaccgtacagc 359
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttgatcacaactagccctgaaaacggggagtggagtgccggcacaggcccaccgtacagc 559
Query: 360 aaactggaacacttacacttaattctgagtagtgtgggaattaaaatggctaaagaagga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaactggaacacttacacttaattctgagtagtgtgggaattaaaatggctaaagaagga 619
Query: 420 tgaaataatttaacattggtcatgatcttaaaggctaaggtgcatccttgagctatttgc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgaaataatttaacattggtcatgatcttaaaggctaaggtgcatccttgagctatttgc 679
Query: 480 tgtgtgagacgcccatcattgtgtctgtgtttctacaactgcaatcatcccaaacaccat 539
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtgtgagatgcccatcattgtgtctgtgtttctacaactgcaatcatcccaaacaccat 739
Query: 540 acataggtttgcaaccacagatgactgccttaa 572
|||||||||||||||||||||||||||||||||
Sbjct: 740 acataggtttgcaaccacagatgactgccttaa 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no058_n04.g1 MSMg01no058_n04.g1 CHROMAT_FILE:
MSMg01no058_n04.g1 PHD_FILE: MSMg01no058_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:10 2005
(527 letters)
>mm_chr2_115420010_115420939
Length = 930
Score = 913 bits (472), Expect = 0.0
Identities = 518/542 (95%), Gaps = 15/542 (2%)
Strand = Plus / Minus
Query: 1 caccgttaacacacaaatcaccttcctatcaattcgagaagtgctccctaggttctcaga 60
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 896 caccgttaacacacaaatcaccttcctatcaatttgagaagtgctccttaggttctcaga 837
Query: 61 ctgcaggtttcgaccgcttggaggtttgcatatcagatattctgcacatcagatatttac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ctgcaggtttcgaccgcttggaggtttgcatatcagatattctgcacatcagatatttac 777
Query: 121 attataatttataacagtagcaaaattacggttataaagtagcagcaaaataattttatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 attataatttataacagtagcaaaattacggttataaagtagcagcaaaataattttatg 717
Query: 181 gttggggtcagcacagcaagaggacctgtattaaagggtcacagcatttggaaggttgag 240
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 716 gttggggtcagcacagcaagaggaactgtattaaagggtcacagcatttggaagattgag 657
Query: 241 aacctcaaaactaaagggaaatgatcataatgttaaaagctgaggcttatctcatgtaat 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 aatctcaaaactaaagggaaatgatcataatgttaaaagctgaggcttatctcatgtaat 597
Query: 301 tattttcttgatgccttaagtactgttcatacaacattgctgtttgggggaagaaaagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tattttcttgatgccttaagtactgttcatacaacattgctgtttgggggaagaaaagca 537
Query: 361 acagaatatgacatcaggatttcgtcgcaatttacaaggaggaggaggag---gaagaat 417
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 536 acagaatatgacatcaagatttcgtcgcaatttacaaggaggaggaggagaaggaagaat 477
Query: 418 gaactaaggctgctgttaggcagattcttttc------------taagtctaatgactac 465
|||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 476 gaactaaggctgctgttaggcaaattcttttcgcttctattttctaagtctaatgactac 417
Query: 466 aactctaaaaagctctgcaagaaacacccttgagtagataacagtaacaataacgagctc 525
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 416 aactctaaaaagcactgcaagaaacacccttgaatagataacagtaacaataacgagctc 357
Query: 526 tg 527
||
Sbjct: 356 tg 355
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 930
Length adjustment: 10
Effective length of query: 517
Effective length of database: 920
Effective search space: 475640
Effective search space used: 475640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
