BAC Information

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BAC

Clone NameMSMg01-059G11
Chromosome2 (Build37)
Map Location 95,812,479 - 95,813,010
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042843
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059G11.T7 (MSMg01no059_g11.b1)MSMg01-059G11.TJ (MSMg01no059_g11.g1)
ACCAG286090AG286091
length726730
length of high quality
(start - end)
421 (45 - 465)542 (75 - 616)
definitionCHROMAT_FILE: MSMg01no059_g11.b1 PHD_FILE: MSMg01no059_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:54 2005CHROMAT_FILE: MSMg01no059_g11.g1 PHD_FILE: MSMg01no059_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGATCCACCCAGACTTGGGCTTTGTACAAGGAGATGATGGATCA
ATTCCCATTCTTCTAAATGACAACTGCCAGTTGTGCCAGCACCATTTGTT
GAAAATGCTGTCTTTTTCCAACTGGATGGTTTCAGCTCCCTTGTCAAAGA
TCAAGTGATCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATCC
CACTGATCTGGGTCTTCAATTCTATTCCATTGATCTACCTGTCTGTCGCT
CTACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGCTTGA
GGTCAGGCATGGTGATTCTACCAGAGTTTCTTTTATTGTTGAGAATAGTT
TTTGCTATCCTAGGCCCCCCGTTATTCCAGATGAATTTGCAAATTGTCCT
GTCTAACTCAGTGAAGAATTGAGTTGGAATTTTGAGGGGGCTTGCATTGA
ATCTGTAGATTGCTTTTGGCACGATAGCCATTTTTACTATATTGATCCTG
GCAATACATGAGCATGTTAGATCTTTCAGTCTTCAGAGGTCTTCTCTAAT
TTCTTTCATCAGAGACTTGAAGTTCTTATAATACAGATTTTTCACTTCCT
ACAGTACCACCGAGGTATTTTATATTATTGTGACTATTGTAAAAGGAGTT
CTCTCCCCAAATCCTTTCTCATTTTG
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATAACAAATGGCTGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAAGAAC
ACTCCTCCATTGTTGGTCGGATTGCAAGCTTGGACCAGAAATCTTAAGTA
AAAGAAAATTCTTTCTTTCACTATATTACACAAACTTTAGCAATACATTA
TTGTCAGTAGAAAGTTAATATACCTGTCTGTGTTGTGACAGTCACCAAAT
TGGTAAACTGATCTTGAACCGGGAAAAACAGTTTGAAAAAAGGATGTCAT
ACTGTAAAAATAGTAGACTGAGCAGTCTGTGAAGCCAAAATCAACGTTAG
AAAACTAGGCTAGAGAAACATAACTTGAAAGTTGCACATGGACCATCTTG
TCAGATGGCAAATATGAGTTAACATGATGACAAATATCAAGAGAAAACAG
ACCTTAATAATAGCGTCAAAGATATCACAAAATAAACACACTGATCAATG
AATGGGTCTCTTGCAAATGAGCGTGTGTGGCGCGTGTGTCTTCTACCCTT
TTAATTATGCCCCCCCCCCCCCAACCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_g11.g1 MSMg01no059_g11.g1 CHROMAT_FILE:
MSMg01no059_g11.g1 PHD_FILE: MSMg01no059_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:54 2005
         (542 letters)



>mm_chr2_95812279_95813214
          Length = 936

 Score =  901 bits (466), Expect = 0.0
 Identities = 518/538 (96%), Gaps = 6/538 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacctgaggaataacaaatggctgagaagcacctgaaaaaatgttcaacatccttaatc 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 tcacctgaggaataacaaatggctgagaaacacctgaaaaaatgttcaacatccttaatc 260

                                                                       
Query: 61  atcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggct 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 atcagggaaatgcaaatcaaaacaaccctgagattccacctcataccagtcagaatggct 320

                                                                       
Query: 121 aagatcaaaaactcaggtgacagcagatgctggcgaggatgtggagaaagaagaacactc 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 aagataaaaaactcaggtgacagcagatgctggcgaggatgtggagaaagaagaatactc 380

                                                                       
Query: 181 ctccattgttggtcggattgcaagcttggaccagaaatcttaagtaaaagaaaattcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccattgttggtcggattgcaagcttggaccagaaatcttaagtaaaagaaaattcttt 440

                                                                       
Query: 241 ctttcactatattacacaaactttagcaatacattattgtcagtagaaagttaatatacc 300
           ||||||| | |||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 441 ctttcacaa-attacacaaactttagcaataca-----gtcagtagaaagttaatatacc 494

                                                                       
Query: 301 tgtctgtgttgtgacagtcaccaaattggtaaactgatcttgaaccgggaaaaacagttt 360
           |||||||||||||||||||||||||||||||||||||| |||||  |||||||||| |||
Sbjct: 495 tgtctgtgttgtgacagtcaccaaattggtaaactgattttgaattgggaaaaacacttt 554

                                                                       
Query: 361 gaaaaaaggatgtcatactgtaaaaatagtagactgagcagtctgtgaagccaaaatcaa 420
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 555 gaaaaaaggatgtcatactgtaaaaatagtagactgatcactctgtgaagccaaaatcaa 614

                                                                       
Query: 421 cgttagaaaactaggctagagaaacataacttgaaagttgcacatggaccatcttgtcag 480
           ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 615 cgttacaaaactaggctagagaaacataactcgaaagttgcacatggaccatcttgttag 674

                                                                     
Query: 481 atggcaaatatgagttaacatgatgacaaatatcaagagaaaacagaccttaataata 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 atggcaaatatgagttaacatgatgacaaatatcaagagaaaacagaccttaataata 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 936
Length adjustment: 10
Effective length of query: 532
Effective length of database: 926
Effective search space:   492632
Effective search space used:   492632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)