BAC Information

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BAC

Clone NameMSMg01-059H17
Chromosome2 (Build37)
Map Location 155,003,369 - 155,003,933
singlet/doubletsinglet
Overlap geneItch
Upstream geneU46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, LOC100043877
Downstream geneLOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059H17.T7 (MSMg01no059_h17.b1)MSMg01-059H17.TJ (MSMg01no059_h17.g1)
ACCAG286149AG286150
length708709
length of high quality
(start - end)		556 (41 - 596)565 (65 - 629)
definitionCHROMAT_FILE: MSMg01no059_h17.b1 PHD_FILE: MSMg01no059_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:00 2005CHROMAT_FILE: MSMg01no059_h17.g1 PHD_FILE: MSMg01no059_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCGCTAAACGACTCCTATTTCCAGAAGAGCGCGGAATTCTC
TCTCTGTCCGATCTCTCTGTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCT
GAGATTAAAATTTCCTACATAGGGGCTGAAGAGATGACTCCATGGCTGTT
AGCCCTGGCTGTTCTTTCAGAGAACCCACGTTCAATTCCCAGCATCCACG
TGGCAACTCACAACTGTCTGTGATCCAACACCCTCACACAGACAGACATG
CAGGCAAAACACCAGTGCACAGGAAATAAAAATAAATCTTTTAAAATTAG
GAAAAAAAATCTCCTACATGTCCTTTTGGACCTCGGAGAATCTTACAAAT
ATGGAACACTTCATGAGTTTGCGTGTCATCCTGTGTAACATGCATGCACA
TCATTCCAGTTTAAAATATGTGCTGCCAAAGTGAGCATTTTGCTTGGAAT
TCTTTTTTTTTTTTAAAGATTTATTTATTTCATGTATGTGAGTGTATTGC
TGTCTTCAGACACACCAGAAAGGGCATTGGATCCCATTACAGATGGTTGT
GAGCCACCATGTAGTTGGCTGGGAATTGAACTCAGAACCTGTAGAGGAGC
AGTCGGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCCACTTGGAATTC
TTACAGCCTTGGATCCCCATGAGTGCTTTGAGACCCAGTTCTCTGTCAAT
GGCAACAA

TGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCAGAAATTCACTATGTAGACCATGCTGGCCTTGAACTCAG
TGATTCTTCTGCCTGTGCTTGTGCCTCCTGAGTGCTTGGATTAAAGATGT
GCACCACTACACCCTCCTCCTGTAGTCTTTTTGAAATTGACTTATATTTG
AACATTTTTATGTACTCAAAATATTAGTTGGCCTGCCCTCCTCCAAAGGC
CAACATAATTTCTTAATTTATTTTCCTTTGCCGTTGTTACTTATATTATT
TTATATGTATTAATGTTTTGCCTGCATGAATGTATGTGCAGTGCCTGGTT
CCTACTGAGATCAGAAGATCTACTTCTGGAACCCCTTGATGCGCTACCAT
CTTGGTGCTGGGAATTGGTCCTAGGTCCTCTCTAAGAATAATATGTGTTC
TAAATTGCCTTGTGTTTATGTTTTTATTTGATATGATGAGTGATATTTTA
AAAATTAAAACAGACTGTGATCATGTTTTCTTTAGGTGGGACTTTTGTTA
TATTCTTAATTTTTATTTTCCAGTTTACAAGCACTTTGATTTGTATTATT
TTATTTAGGTAATAGGGTACATGCATCCCTGGAATTCCTCTGACAGTAAA
AGCTGGTCCCACAAGCTTACTAGCTGTCTCCATTCCCGGATGGCAAAACC
TCTGCATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_h17.g1 MSMg01no059_h17.g1 CHROMAT_FILE:
MSMg01no059_h17.g1 PHD_FILE: MSMg01no059_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:00 2005
         (565 letters)



>mm_chr2_155003169_155004133
          Length = 965

 Score = 1085 bits (561), Expect = 0.0
 Identities = 564/565 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcactatgtagaccatgctggccttgaactcagtgattcttctgcctgtgcttgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcactatgtagaccatgctggccttgaactcagtgattcttctgcctgtgcttgtgc 260

                                                                       
Query: 61  ctcctgagtgcttggattaaagatgtgcaccactacaccctcctcctgtagtctttttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctgagtgcttggattaaagatgtgcaccactacaccctcctcctgtagtctttttga 320

                                                                       
Query: 121 aattgacttatatttgaacatttttatgtactcaaaatattagttggcctgccctcctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattgacttatatttgaacatttttatgtactcaaaatattagttggcctgccctcctcc 380

                                                                       
Query: 181 aaaggccaacataatttcttaatttattttcctttgccgttgttacttatattattttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaggccaacataatttcttaatttattttcctttgccgttgttacttatattattttat 440

                                                                       
Query: 241 atgtattaatgttttgcctgcatgaatgtatgtgcagtgcctggttcctactgagatcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtattaatgttttgcctgcatgaatgtatgtgcagtgcctggttcctactgagatcag 500

                                                                       
Query: 301 aagatctacttctggaaccccttgatgcgctaccatcttggtgctgggaattggtcctag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagatctacttctggaaccccttgatgcgctaccatcttggtgctgggaattggtcctag 560

                                                                       
Query: 361 gtcctctctaagaataatatgtgttctaaattgccttgtgtttatgtttttatttgatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcctctctaagaataatatgtgttctaaattgccttgtgtttatgtttttatttgatat 620

                                                                       
Query: 421 gatgagtgatattttaaaaattaaaacagactgtgatcatgttttctttaggtgggactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatgagtgatattttaaaaattaaaacagactgtgatcatgttttctttaggtgggactt 680

                                                                       
Query: 481 ttgttatattcttaatttttattttccagtttacaagcactttgatttgtattattttat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgttatattcttaatttttattttccagtttacaagcactttgatttgtattattttat 740

                                    
Query: 541 ttaggtaatagggtacatgcatccc 565
           |||||||| ||||||||||||||||
Sbjct: 741 ttaggtaaaagggtacatgcatccc 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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