BAC Information

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BAC

Clone NameMSMg01-059J15
Chromosome2 (Build37)
Map Location 170,947,436 - 170,947,574
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp217, Silg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955
Downstream geneLOC100043743, LOC100043744, Cbln4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059J15.T7 (MSMg01no059_j15.b1)MSMg01-059J15.TJ (MSMg01no059_j15.g1)
ACCAG286241AG286242
length709738
length of high quality
(start - end)
487 (69 - 555)139 (68 - 206)
definitionCHROMAT_FILE: MSMg01no059_j15.b1 PHD_FILE: MSMg01no059_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:08 2005CHROMAT_FILE: MSMg01no059_j15.g1 PHD_FILE: MSMg01no059_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGGCGCGGAAT
TCCTCATGTGACACCCAGTCCCCAGCTGATTCTGAGTGGTAAATAAAGTT
GCCAGTGGCCAATGGCTGGGCAGAGAGACAGAGGTGGGACTTTAGCCTTC
ACAGGCAAGGGGACCAAGGAAGAAGCTGAAACACCCTGTCAGGGAAGGAA
CAAGATCAGGACTTGAGAGCTGCAGGAAGAGAGGCATTCCAATCTTCTAA
GAGTCAGGGAAGAGCAGGCCCAGCCCTGCCCCCATCTATTCATGTACCTC
TGATTTACTCCCCCAAGTCCCTGGGTAAATCTCCCATTTAATTGCTATCT
CGCAGAATCCTCTCTCCCCCCTGCCAGCGTCCCGCCTCCTATTTCCTGCC
TCAGCTCATTGGTTATCGGCTTTTTTATTGACAGGTGACACTTTTAAGAG
ATTCTCTCTACCTGTTTTCCCTGAGATACACATAGGAAGTGAATTTGCTT
ATAATTTTCTCATTCTACCCAATCTTGCTTTACATCTCCCATCATAAGGA
TCTCAAATGAAACAACATCTGTAATTAACCTGCCTAGTGACGGCGTTTTC
CTTCGAAAGATCTGTTTATTTATCTGTTCACTGCTGGGTTGTTTAGTTAA
CTCCTTTGTCTCTATTTCTACTAATGCTGATATCCTGAAAGTTGGCATTG
TGTGACAAG
TGCTGTGGGTAGCCTGGCGGCGCCTGTTTCTCAAATGGAGGTGAACTATA
GAATTTCCGCGGAATTCATCTGTTGATCTTAGAGCATCTGCCAAGCTGTC
TCTGGTACAAGGCAGCTGGGAGAAATTTGCTTTTCAAATGCAGATGCTCA
CCTGATTGTCAGGGGGTGGGGAGATAGGGTAAGAGATGAAGATGTGCTGA
GTGGTGACTGGAGAGGCTGAGCAGTTGGCCTGTATCTGATGATGATTCTC
ACGAGAATTTTTAGTGTCTCCTAATGCCGCCGCTGCAGGCTTCAGATTGG
TCACTTGCCATTTTTTTTTTCCTTACTGGACTTCAATTGGATATGACAGC
TTTACACTGGACCCCCCCCCCCTCTTTCTATGTGGTTTTGCCTATTTTCG
TTTTTTGTCCCCCTCTTTTCTTGTTTTTTTTTCTGCTTATTCTTTTCTTC
TGCCCCCTCCTCTTTTCCCTTTGTTTCTTTTCTTTTTTCTCCTTCTTTCT
CCCGCCTTAGCCTTCTCACTTTTTTCCTTTTCTTTCCTACTCTTTTACTC
CTATGCTCCTATAATTTTTTTTTTCTTTCCTCCCCTATTCTTTTTCGCTT
TCCCTCTTTTTTTTCGCTCCCGTTCTTTCCTTCCCCCCCCCCACTATTCT
CTCTTTTTTTTTCGTTTACCCTTCCTTACCCCTTTACCTTTTTTTTTTTT
CATTTTTACCCCTTTTTACCCTCCTCGTTTACCCGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_j15.g1 MSMg01no059_j15.g1 CHROMAT_FILE:
MSMg01no059_j15.g1 PHD_FILE: MSMg01no059_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:09 2005
         (139 letters)



>mm_chr2_170947236_170947774
          Length = 539

 Score =  238 bits (123), Expect = 1e-67
 Identities = 135/139 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctgttgatcttagagcatctgccaagctgtctctggtacaaggcagctgggagaaatt 60
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 201 atctgttgatcttagagcatctgccaagctgtctctggtacatggcagttgggagaaatt 260

                                                                       
Query: 61  tgcttttcaaatgcagatgctcacctgattgtcagggggtggggagatagggtaagagat 120
           ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 261 tgcttttcaaatgcagatgctcacctgattggctgggggtggggagatagggtaagagat 320

                              
Query: 121 gaagatgtgctgagtggtg 139
           |||||||||||||||||||
Sbjct: 321 gaagatgtgctgagtggtg 339


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space:    69561
Effective search space used:    69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)