Query= MSMg01no059_j23.b1 MSMg01no059_j23.b1 CHROMAT_FILE:
MSMg01no059_j23.b1 PHD_FILE: MSMg01no059_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:10 2005
(645 letters)
>mm_chr2_3377920_3378966
Length = 1047
Score = 698 bits (361), Expect = 0.0
Identities = 436/471 (92%), Gaps = 26/471 (5%)
Strand = Plus / Minus
Query: 3 ggaattcaaattttat-ttccatagtttcatcattcaagtaccaggcaataagggcagga 61
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggaattcaaattttatattgcatagtttcatcattcaagtaccaggcaataagggcagga 397
Query: 62 ggttggtactatcatcattttatatctacatgacagataatgaaatatagcttagaggct 121
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 396 ggttggtactatcatcattttatatctacatgacagataatgagatatagcttagaggat 337
Query: 122 atatcacaaagctgatcttaaaatatgtagccaggttaactgtctggtagattgtttacc 181
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 336 atatcacaaagctgatcttaaaagatgtagccaagttaactgtctggtagattgtttacc 277
Query: 182 aaaagtttg-gtgtgaatcacagtgaaatgtaagagaccgtcaggactccctctttggtt 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaagtttgtgtgtgaatcacagtgaaatgtaagagaccgtcaggactccctctttggtt 217
Query: 241 gtgtgatttaagtgattccttcttaaggataaat----ctg-agattc----ggccattc 291
|||||||||||||| || || ||||| ||| | ||| | || || ||||
Sbjct: 216 gtgtgatttaagtgctt-gtt-ttaag--taatttctcctgta---tcccaggg--attc 166
Query: 292 tcctgtattccagcacttgctgcagatacaacattcttacaagttccttacattcaattt 351
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 165 ------attccagcacttgctgcagatacaacattcttacaagttccttacattcaactt 112
Query: 352 gagacctcatagccacatagcctcttttatactttaaatcatctataaattacttctaat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gagacctcatagccacatagcctcttttatactttaaatcatctataaattacttctaat 52
Query: 412 gcccgatggaatacaaagttatactggactaagggcacgaacactctgtct 462
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 gcccgatggaatacaaagttatactggactaagggcacgaacactctgtct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1047
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1037
Effective search space: 658495
Effective search space used: 658495
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_j23.g1 MSMg01no059_j23.g1 CHROMAT_FILE:
MSMg01no059_j23.g1 PHD_FILE: MSMg01no059_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:10 2005
(578 letters)
>mm_chr2_3220497_3221474
Length = 978
Score = 1060 bits (548), Expect = 0.0
Identities = 572/582 (98%), Gaps = 4/582 (0%)
Strand = Plus / Plus
Query: 1 agtctgtcaggtacctttacctactaagacaataaaccttggagggttttattggttgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctgtcaggtacctttacctactaagacaataaaccttggagggttttattggttgag 260
Query: 61 gtaaaaaaattttaatcaaaagaaatttcctcctgtgggaaatgagtttcttttgtttct 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 gtaaaaaaattttaatcaaaagaaatttcctcctgtggaaaatgagtttcttttgtttct 320
Query: 121 attgcttcagggtaagtattttgatggactagtgacataaatcactagcaagtagagtac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgcttcagggtaagtattttgatggactagtgacataaatcactagcaagtagagtac 380
Query: 181 tggtctagtatgtgcaaagccaaataaatgaagatggatagtgtcataccaaagaggtat 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 tggtctagtatgtgcaaagccaaataaatgaagatggatagtgtcgtaccaaagaggtat 440
Query: 241 ctataacacatatttttagtgcatataagtctttttaaaaatatatttcacccatggaag 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctataacacctatttttagtgcatataagtctttttaaaaatatatttcacccatggaag 500
Query: 301 gagttacagagacaaagtttggagctgagacaaaaggatggaccatctagagactgccat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagttacagagacaaagtttggagctgagacaaaaggatggaccatctagagactgccat 560
Query: 361 atccagggatccatcccataatcagcatccaaacgctgacaccattgtatacactagcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atccagggatccatcccataatcagcatccaaacgctgacaccattgtatacactagcaa 620
Query: 421 gattttgctgaaaggacccagatatagctgtctcttgtgaggctatgccggggcctagca 480
||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 621 gattttgctgaaaggaccctgatatagctatctcttgtgagactatgccggggcctagca 680
Query: 481 ----cagaagtggatgctcacagtcagctattggatggatcacagggcccccaatggagg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacacagaagtggatgctcacagtcagctattggatggatcacagggcccccaatggagg 740
Query: 537 agctagagaaagtatccaaggagctaaagagatctgcaaccc 578
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agctagagaaagtatccaaggagctaaagagatctgcaaccc 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
