Query= MSMg01no059_n24.b1 MSMg01no059_n24.b1 CHROMAT_FILE:
MSMg01no059_n24.b1 PHD_FILE: MSMg01no059_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:29 2005
(328 letters)
>mm_chr2_145314556_145315283
Length = 728
Score = 470 bits (243), Expect = e-137
Identities = 303/351 (86%), Gaps = 46/351 (13%)
Strand = Plus / Minus
Query: 4 gaattctctactagtttgcatgatagggtaaggaagaagacaatttaataagacaaactg 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gaattctctactagtttggatgatagggtaaggaagaagacaatttaataagacaaactg 338
Query: 64 attattagcaatgtgaacaatttcccagtagattactttgttagcaagcaaggaatttta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 attattagcaatgtgaacaatttcccagtagattactttgttagcaagcaaggaatttta 278
Query: 124 ttttggattttctttatgcctaaaacacacttggaaatattcaagtgtgatggtcagc-- 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttttggattttctttatgcctaaaacacacttggaaatattcaagtgtgatggtcagctt 218
Query: 182 ---------------------ttttttttttttttttttttttg--g-caacttgaccca 217
||||||||||||||||||||||| | ||||||||||||
Sbjct: 217 tttttttttttttttttttttttttttttttttttttttttttgtcgtcaacttgaccca 158
Query: 218 agttagagtgaattgggaagaaggaacattagtgaaagtgaattgaggaattgcctccca 277
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 agttagagtgaattgggaagaaggaacattagtgaaagtga------------------- 117
Query: 278 gattatcctgttggtatgtgtgtaggggtatttccttgattaatggttgat 328
|||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 116 -attatcctgttggtatgtgtgtaggggtatttcctttattaatggttgat 67
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_n24.g1 MSMg01no059_n24.g1 CHROMAT_FILE:
MSMg01no059_n24.g1 PHD_FILE: MSMg01no059_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:29 2005
(509 letters)
>mm_chr2_145169892_145170801
Length = 910
Score = 895 bits (463), Expect = 0.0
Identities = 499/511 (97%), Gaps = 3/511 (0%)
Strand = Plus / Plus
Query: 1 ctctatagaa-atgtatacctggctaagcatataagacaggtaggactgaatatagaaga 59
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ctctatagaatatgtatacctggctaagcatataagacaggtaggacagaatatagaaga 260
Query: 60 tattggactgaagaataaatgagaaaatgtctattaacatgattacatgctagacattac 119
||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct: 261 tattggactgaagaataaatgagaaaatgtccattaatatgactacatgctagacattac 320
Query: 120 aaactcgtataa-catatacccatgtgtaagacatgctagtaaatgcatctttttataca 178
|||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aaactcatataaacatatacccatgtgtaagacatgctagtaaatgcatctttctataca 380
Query: 179 tttcaacccaacctgtacaatcaattatttaggtcttaaattaagcacagtttaggtgta 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcaacccaacctgtacaatcaattatttaggtcttaaattaagcacagtttaggtgta 440
Query: 239 cctctcagattttccctcctcccacaactggcctattttaatttatagatttggaacctt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctctcagattttccctcctcccacaactggcctattttaatttatagatttggaacctt 500
Query: 299 taagctccacattccctttttctctctcacagtcaaaacaactcctacgagccatatgct 358
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 taagctccacattccctttttctctctcacaatcaaaacaactcctacgagccatatgct 560
Query: 359 tttattcattcaaaataagatttgttttcatcatagccagttagagtcttgccaacagtc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttattcattcaaaataagatttgttttcatcatagccagttagagtcttgccaacagtc 620
Query: 419 taagataacctctgagaaggcatatcaaagcccaaccttctgatcaaggaaagaggctaa 478
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 621 taagataacctctgagaaggcatatgaaagccca-ccttctgatcaaggaaagaggctaa 679
Query: 479 ttggaaaccacagcagttggaaagcaaacaa 509
||||||||||||||||||||||| |||||||
Sbjct: 680 ttggaaaccacagcagttggaaatcaaacaa 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 910
Length adjustment: 10
Effective length of query: 499
Effective length of database: 900
Effective search space: 449100
Effective search space used: 449100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
