TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCACTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATATT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
GAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAACAAAAC
ACCCATGGAAGGAGTCACAGAGACAAAGTTTGGAGCTGAGATGAAAGGAT
GGACCATGTAGAGACTGCCATATCCAGGGATCTACCCCATAATCAGCATC
CAAACGCTGACACCATTGCATACACTAGCAAGATTTTATTGAAAGGACTC
AGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAA
GTGGATGCTCACACCCCGCTAATGGATGGATCATAGGGCTCCCAATGGAG
GAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGT
GGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTG
CATATATATCAAAAGATGGCCTAATCGGCCATCACTGGAAAGAGAGGCCC
ATTGGACTTGCAAACTTTTTATGCCCCAGTACAGGGGAACACCAGGGCCA
AAAAGGGGGAGTGGGTGGGCAGGTGAAGTGGGGGTGGNTNNNATTTTTTT
TTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAATTACAGAAAAAATATT
TTTCCTTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC
TTCTTTCCTTCCTTCCTTCCTTCCTTCCCTCCTTCCTTTGTTCATTCCTT
GCATTCTTCTTTTAATTTTTTCTTTCATTTTTCTTTTGTTCTTTCATTCT
TTTGTTTTCTTTTAAATAAGAGTCACCCTGATTAATATTACTAGATAAGT
TTAATAGCTTTTTTTTTGTTACTGGACTTCTGTAACCTCATTCTGACCTT
TTGTGAAAGTTGTCAACTTGGTGTTCATGATCTCTGCTTTATCAAACAGT
ATTAAGCAAAAGAGATTACTGTCTATATTTATGATGAGAATGAGTTATAT
ACTGTGAGGGCTGGGGGTGGGGGGAAGAGGNNNNNNNNNNNCNNNNNNNC
NCNNCNNNCNNNNNNNNNNNNNNNNNNCCCCCCCNCCTCCCCCCCCTCNC
CCCCCTTTCCNCCCCCCCCCCCCCCCTCCCNCCCCTCCTCCCCTTCTTTT
CTTCTTTCTTCTTTTCTTTCTTCTTTCTTTTCCTCCTATTTTTTTTTTTT
TTCTTTTTCTTCTCTCTTCCCCCTTCTTCCTTTCCTTTCTTTTTTTTTTT
TTTCCT

Query= MSMg01no060_c19.g1 MSMg01no060_c19.g1 CHROMAT_FILE:
MSMg01no060_c19.g1 PHD_FILE: MSMg01no060_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:51 2005
         (406 letters)



>mm_chr2_97538370_97539176
          Length = 807

 Score =  714 bits (369), Expect = 0.0
 Identities = 396/407 (97%), Gaps = 6/407 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaggaaattacagaaaaaatatttttccttcccttccttccttccttccttccttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cacaggaaattacagaaaaaatatttttccttcccttccttccttccttccttccttcct 263

                                                                       
Query: 61  tccttccttccttccttctttccttccttccttccttccttccctccttcctttgttcat 120
           |||||||||||||||    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tccttccttccttcc----ttccttccttccttccttccttccctccttcctttgttcat 319

                                                                       
Query: 121 tccttgcattcttcttttaattttttctttca-tttttcttttgttctttcattcttttg 179
           |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 320 tccttgcattcttcttttaattttttctttcattttttcttttgttttttcattcttttg 379

                                                                       
Query: 180 ttttcttttaaataagagtcaccctgattaatattactagataagtttaatagc-ttttt 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 380 ttttcttttaaataagagtcaccctgattaatattactagataagtttaatagctttttt 439

                                                                       
Query: 239 ttttgttactggacttctgtaacctcattctgaccttttgtgaaagttgtcaacttggtg 298
           ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 440 ttttgttactggaattctgtaacctcattctgaccttctgtgaaagttgtcaacttggtg 499

                                                                       
Query: 299 ttcatgatctctgctttatcaaacagtattaagcaaaagagattactgtctatatttatg 358
           ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 500 ttcatgatctctgctttctcaaacagtattaagtaaaagagattactgtctatatttatg 559

                                                          
Query: 359 atgagaatgagttatatactgtgagggctgggggtggggggaagagg 405
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgagaatgagttatatactgtgagggctgggggtggggggaagagg 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 807
Length adjustment: 9
Effective length of query: 397
Effective length of database: 798
Effective search space:   316806
Effective search space used:   316806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)