BAC Information

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BAC

Clone NameMSMg01-060J15
Chromosome2 (Build37)
Map Location 180,019,628 - 180,019,870
singlet/doubletsinglet
Overlap geneBC066135
Upstream geneLOC100039413, Cdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2
Downstream geneGata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060J15.T7 (MSMg01no060_j15.b1)MSMg01-060J15.TJ (MSMg01no060_j15.g1)
ACCAG287007AG287008
length741770
length of high quality
(start - end)
244 (62 - 305)89 (73 - 161)
definitionCHROMAT_FILE: MSMg01no060_j15.b1 PHD_FILE: MSMg01no060_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:22 2005CHROMAT_FILE: MSMg01no060_j15.g1 PHD_FILE: MSMg01no060_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTAAACGACTCACTAGTCAGCACCGGACCGCGGAATTCATTATAT
TTCAAAAACACCAACTGTCTCTTTTCCCCACCCCTAGCCCAGCCTCCAGA
AGCCAAGGCTTATACCCAATTCTCTGACCCCATGCATATTCTAGTATTAA
TCATTTCAGCCCCAGCCTTTATCCGTTCACTCTCTGCCTCTCCCCCCAAC
AGCCCCTCACAGGGAGCAGATGTGCCCCACGTGTGTAAAGTTTACATACC
TTCCAGACTATAGCCCCTACCTAAACCAACCCTCTTCCCACTCCCCTCTC
TGCATTTTGGACACAGAAGGGCAGTAGAGGTCCCAGGCCTCCTCACAGTC
AGTGCAGCGCGGTCAGCGTACAAGGAGTCATGAATAGCTTCACGTAGTCC
CCCCACACGCTGAAGGAAGCCCATGAGAAAGAGGCCCTGGGTGAGTGAAC
ATTGTGCTCATAGGAAAGTGGTCTTGGTGGGGTCTTAGCCTGTTAGGAAA
CTTCCCAGTATACTCTCTAAAGCACAGGTAGTCTGCCTGCAAAAAAGAAT
CTTGATTGGTGAATACAAGTTGTTAAGCTTCCAATGCCCAGTCTATTAAC
CCTTATCCTGAACATACTTATATTATGTCCCTATTATGTGCACTCACGAT
TACCCCCATGTTGATCGTTCATCCAACTTAAAACTTCTGCACCTCATATA
TACATTTTTGCCCTTCCACGAAAGCAACCCCGCATTTCGCG
AATGAAGTGGGAGGCCTGGCGAACGCCTGTTTCAAAAXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTAATAAACTTATCCTCTGTGACTATAA
AACTTGCTCAGCAGGTAGATGCTAACAAGACTTGTTTTTGCTGTTGCTGA
GTGGAAACTGAATGCTGAAGTCAGCTGTTCACTTACACAGCTCTAAGCAC
GGTTAGGTTTTACTTTGGTATGCATTATGTAGCTCTTGGCAGAAGCCACA
AATCTGGGAACCTAAAGAATGCTGAGGCTCTGGGACAGCTAAGTAAAAGC
CATTTGTCTCATCTATAATGGCACCTCTTGTACAGCTGGAGTTAACTGTG
TCTGCCTATCGCATTGTCAGCCATGTTTAGTAAAGGTTATTTCTGGTTCC
TTCCCCAAAACCGCCTGTGCTTAAAGCAAAGCTGCGTGACCTGTGCACTC
TCATCTTGATGACTGCAGGCCTTATGCATGGTTAATGCCCACCAGCTGTT
CTTGCTTCTTTCCTATTTAATTCATTGTGTAAAACCTCGGATTGTCTTTG
TGACTCCCAATTTACACCATACTTGTCATAATTACCACTGTCTGTTTACT
ATGACAGCGTCTCCTCTTACCTTTTATGAATCGTTCCCTATATATCTCTT
GACTTCCTGACTCGTCATCTCGCATACCTGCCACCATAACACTACATATA
CCATAACCGCTTACTATATCCCACCCCTTTATTTCCTCTTTCCTGCCCCC
CTTCTATATTTTATCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_j15.b1 MSMg01no060_j15.b1 CHROMAT_FILE:
MSMg01no060_j15.b1 PHD_FILE: MSMg01no060_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:22 2005
         (244 letters)



>mm_chr2_180019428_180020071
          Length = 644

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caactgtctcttttccccacccctagcccagcctccagaagccaaggcttatacccaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caactgtctcttttccccacccctagcccagcctccagaagccaaggcttatacccaatt 384

                                                                       
Query: 61  ctctgaccccatgcatattctagtattaatcatttcagccccagcctttatccgttcact 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 383 ctctgaccccatgcatattctagtattaatcatttcatccccagcctttatccgttcact 324

                                                                       
Query: 121 ctctgcctctccccccaacagcccctcacagggagcagatgtgccccacgtgtgtaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctctgcctctccccccaacagcccctcacagggagcagatgtgccccacgtgtgtaaagt 264

                                                                       
Query: 181 ttacataccttccagactatagcccctacctaaaccaaccctcttcccactcccctctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttacataccttccagactatagcccctacctaaaccaaccctcttcccactcccctctct 204

              
Query: 241 gca 243
           |||
Sbjct: 203 gca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)