BAC Information

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BAC

Clone NameMSMg01-060J16
Chromosome2 (Build37)
Map Location 111,801,383 - 111,801,550
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308
Downstream geneOlfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060J16.T7 (MSMg01no060_j16.b1)MSMg01-060J16.TJ (MSMg01no060_j16.g1)
ACCAG287009AG287010
length816692
length of high quality
(start - end)
---168 (126 - 293)
definitionCHROMAT_FILE: MSMg01no060_j16.b1 PHD_FILE: MSMg01no060_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:22 2005CHROMAT_FILE: MSMg01no060_j16.g1 PHD_FILE: MSMg01no060_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATTTGCTGTCGCTAAACGAATCACTTTTCCAAAAAGGAGCCGCGGAA
TTCTTATATTCCCCAAAAGAATGTACTGACTTGCATTCTTCCAATGAAAG
AGCGATGATATTTCATGACTTGCCAGCTATATATAGCACCCAGAAACCGC
CGGTATGATTGTGCCCCTATAGTCCGCCCTGCTCTTGACACATTCACATC
TAAACACCATGGCCTATGCCCCGCCGATAAAACACTCCTGATAACAGCTT
AATCTTATATAGTTAGAGAAAACGTAATCACCTAAAATGTTTATCCGACA
TGCTACACATTCTCTCATATCTTTTTTATTTCCTGTATTCACCTTTTTTT
TTCCCCTTTCTCTTTTGCCCCCCCCCCCCCATTTTTTATCTAAACTTTTT
TTCATCTTCCAATATTCTCTTTCACCCTATTATTAAATTAATCCCCTTTG
ATATATTCCCTGCCCCAATACTCTATTCGTTTTTTTCCTATGTATATGCA
CAGCCACCACCCGTTAACTCCATTTATCCCCTTCCTACTCCCCTTCGCTA
CAACAATTCTAAACCTACTCACCCCCCCCTTTTATACCCCCTTTCTCCTC
AAAAACCCCCCCAACCCCAATAATAAAAAAATTACCCCCCCCACACCCCA
ATAAATTTATACGTCACCCCTTCCCCCTTTTACCCTCCCCCCCCCCCCCC
TCATAAACCCCACTTCCCCCTTTTTTATTTTTCCCCCTATATAATCACCT
TTACGTATATCACACATAGTTCCCACTTTTCTATTTTTTCCATTTCGTCC
TTTTTTTGACCCTATT
TATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTACAGCTATAACTGCTGTAAGCTGCTT
GACATGGCTGCTATTAACCCACTAAGGTCTTTTGCAATAGTTCTAAGTGT
TCTTAATGGATGAGTCTCAAGGTCCGAATATCCTTTAAAAAACAGCCATT
AAACCTTGTTTTCTTTTGAGTTTTTGATGAAAGATTTTGTTATAGGTATT
TAGTCATACCTTAAACTGATTTATGATTTTTTGTTATTAGTTGTGTTTGG
AACTTGCTCACGTCTTTGTATTCAGCTTAGTTGCAATGCTATAGTAAAAA
TAGTCTCATATCTTGAACATTCTCCTATTCTCTTTATACACTTATAATGT
ACAGTTTCTCCCATTTTCCCCCTCAGGTATTACTATCCCCAATGTTCTTG
GAAGGTATGATTCAGACCTATGTGTCCGAGTTTGTGCTTTCCGGGAATTA
CTAACTCTTGGAAACATTCCATTATTCCTCTTTTGGCCTCCCCTCCCTGT
ACTCCGCACCATGCCGCATAGTAAACCCTCCCTTTGCTTCCTATGAGGCA
ACTGTACCCCCTTTAACACTCTCCAATGTAATCCCTGGCCGACTAACCCG
TCTTCTTATTGTGCTCACACCTACCCTTCTTGTATTTGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_j16.g1 MSMg01no060_j16.g1 CHROMAT_FILE:
MSMg01no060_j16.g1 PHD_FILE: MSMg01no060_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:22 2005
         (168 letters)



>mm_chr2_111801183_111801750
          Length = 568

 Score =  325 bits (168), Expect = 9e-94
 Identities = 168/168 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtcttttgcaatagttctaagtgttcttaatggatgagtctcaaggtccgaatatcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggtcttttgcaatagttctaagtgttcttaatggatgagtctcaaggtccgaatatcctt 309

                                                                       
Query: 61  taaaaaacagccattaaaccttgttttcttttgagtttttgatgaaagattttgttatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 taaaaaacagccattaaaccttgttttcttttgagtttttgatgaaagattttgttatag 249

                                                           
Query: 121 gtatttagtcataccttaaactgatttatgattttttgttattagttg 168
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gtatttagtcataccttaaactgatttatgattttttgttattagttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)