BAC Information

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BAC

Clone NameMSMg01-060J17
Chromosome2 (Build37)
Map Location 180,019,630 - 180,019,895
singlet/doubletsinglet
Overlap geneBC066135
Upstream geneLOC100039413, Cdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2
Downstream geneGata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060J17.T7 (MSMg01no060_j17.b1)MSMg01-060J17.TJ (MSMg01no060_j17.g1)
ACCAG287011AG287012
length725754
length of high quality
(start - end)
267 (37 - 303)39 (74 - 112)
definitionCHROMAT_FILE: MSMg01no060_j17.b1 PHD_FILE: MSMg01no060_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:22 2005CHROMAT_FILE: MSMg01no060_j17.g1 PHD_FILE: MSMg01no060_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGAATTCATTATT
TTCCAGGACCCCCAACTGTCTCTTTTCCCCACCCCTAGCCCAGCCTCCAG
AAGCCAAGGCTTATACCCAATTCTCTGACCCCATGCATATTCTAGTATTA
ATCATTTCAGCCCCAGCCTTTATCCGTTCACTCTCTGCCTCTCCCCCCAA
CAGCCCCTCACAGGGAGCAGATGTGCCCCACGCGTGTAAAGTTTACATAC
CTTCCAGACTATAGCCCCTACCTAAACCAACCCTCTTCCCACTCCCCTCT
CTGCTGTTTGGACACACAAGGGTAGTAGAGGTCTCAGGTCTCCTCACAGC
CCGTGCAGTGTGGACAGCGTACAAAGAGTCATGCATATCTTCATGTAGCC
CCCCATCAGGCTGAAGGAATTCCACGATAAACAAGCCCTGTATGAGTGAA
TATTGTGCTCATAGGAAAGTGTTCTTGGCGGATTCTTAGACTGCCACGAA
ATTTCTAAGTTTACTCTCTTATGTCCACGCAAGTCTGTCTGTTTAACTGA
CTCTTGACTGTTTTACACTATCTTCCCCCCCTCTCTATTGCCATCCTAGA
CCCACTTACTTAAAAAACCCAAAACACCCTGCCCCAATGTCCCGTTTAAA
TATGGTGCTCACGTACTAGTGATTCCCCACCCTCTCTTTCATTTTCCCCA
TTCCCTCCCTCACCGTCCTTTTCGT
ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAATAAACTTATCCTCTGTGACTATA
AAACTTGCTCAGCAGGTACATGCTAACAAGACTTGTTTTTGCTGTTGCTG
AGTGGAAACTGACCGCTGAAGTCAGCTGAATCACTTACACAGCTCTAAGC
ACGGGTAGGTTTTACTTTGGTATGGATTATGTAGCTCTTGGAAAAAACCA
CAAATCTGGGAACCTAAAGAAAGCTGAGGCTCTGGGACAGCTAAGCAAAA
GCCATTTGTCCCATCTATAATGGTACCTCTTGCACAGCCGTAGTTAACCG
TGCCCGGCTAAAGCATTGCTAGCCATGTTTAGTAAAGGTCACTTCTGGTT
CCTTCCCCACCACCGCCTAAGCTTAGCGCCAATATGTGTGACCTGTGAAC
TCTCATCTTGACGATTGCTTACCTCTCCCAGTCCAAAGTCCACCAACATG
GTCCTGAATCTTTCCTACTACATCCATTGTGAACAAGCACGCACTGCCTA
TGACAACTAAAAATTCCGTTCAATTCCCCAAACAATAAATCTTCCGCCGT
CTTTCCCTTCTCCCTTACTAAATCCAAACCTTTATGTGACCGTCTGTCTC
ATTGACATTGTCACCCTGCCCTGATAAATATGACAAACTTACCTACCCCC
TCTTCACATCCGCCTCCGTTTTTCATTTTCTTCCCCCTAATTTTTTATCA
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_j17.b1 MSMg01no060_j17.b1 CHROMAT_FILE:
MSMg01no060_j17.b1 PHD_FILE: MSMg01no060_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:22 2005
         (267 letters)



>mm_chr2_180019429_180020095
          Length = 667

 Score =  472 bits (244), Expect = e-137
 Identities = 261/268 (97%), Gaps = 4/268 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggaattcattat--tttccaggacccccaactgtctcttttccccacccctagcccagcc 59
           ||||||||||||  ||  ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 467 ggaattcattatactt--caggatccccaactgtctcttttccccacccctagcccagcc 410

                                                                       
Query: 60  tccagaagccaaggcttatacccaattctctgaccccatgcatattctagtattaatcat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tccagaagccaaggcttatacccaattctctgaccccatgcatattctagtattaatcat 350

                                                                       
Query: 120 ttcagccccagcctttatccgttcactctctgcctctccccccaacagcccctcacaggg 179
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttcatccccagcctttatccgttcactctctgcctctccccccaacagcccctcacaggg 290

                                                                       
Query: 180 agcagatgtgccccacgcgtgtaaagtttacataccttccagactatagcccctacctaa 239
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agcagatgtgccccacgtgtgtaaagtttacataccttccagactatagcccctacctaa 230

                                       
Query: 240 accaaccctcttcccactcccctctctg 267
           ||||||||||||||||||||||||||||
Sbjct: 229 accaaccctcttcccactcccctctctg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)