BAC Information

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BAC

Clone NameMSMg01-061C05
Chromosome2 (Build37)
Map Location 139,376,691 - 139,377,161
singlet/doubletsinglet
Overlap geneC130053K05Rik
Upstream geneLOC628103
Downstream geneLOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061C05.T7 (MSMg01no061_c05.b1)MSMg01-061C05.TJ (MSMg01no061_c05.g1)
ACCAG287417AG287418
length755724
length of high quality
(start - end)
344 (64 - 407)471 (69 - 539)
definitionCHROMAT_FILE: MSMg01no061_c05.b1 PHD_FILE: MSMg01no061_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:02 2005CHROMAT_FILE: MSMg01no061_c05.g1 PHD_FILE: MSMg01no061_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAAACGGCGGAATTCTTTGT
TTATCTCCGAGACCCATTTTTAATGTGGTTATTTGATTTTCTGGAGTCCA
CCTTCTTGAACTCTATATATATTGGATATTATTCCCCTATCTGATTTAGG
ATAGGTAAAGATCCTTTCCCAATGTGTTGGTGGCCTTTTTGTCATATTGA
CGGTGTCTTTTGCCTTGCAGAAGTTTGCAGTTTCATGAGGTCCCATTTGT
CAATTCTCGATCTTACAGTACAAGCCATTGATGTTCTATTCAGGAATTTT
TCCCCTGTGCCCATATCTTAGAGGCTTTTCCCCACTTTCTCCTCTATAAG
TTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGATTTGA
CCTTAGTACAAGCACATAGGAATGGATCAATTCGAATTCCTCTACATGAT
AATCACCAGTTTTGCCAGCACCATTTGTTAAAAATGCTGTCTTTCCTCCA
CTGAATGGTTACAGCTCCCTTGTCAAAGATCAAGTGACCATACGGTGTGT
GGGTTTCATTTCTGGGTCTTCCAATTCTATTCCATTGGGCCTACTTGTCA
TGGCACTATAACCATTCCCCACCATATTTGTTATCACCCCTTGGTTTCGT
AATCCAAATTTTTCAGCCTCACGTTATGGCTGAACTCCTCCCTAAAGTCC
TTTTTTTTATCCCTTGGCACAACAATTTCTTTTGTCCTTCCCACATTTTT
CTCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATGCATTTTCTTAGATTTGAACTTGTGATTT
GATTAAGAGCATTGGGTGATACTACAGCATCACATAGGGCATTGGGGTTA
TGTACAAATGATGCACTTCTACTGTAATCCAGTCATCACCTTTGTGTGTA
CAGGGGAAGAAAGATGAGAAAATATACATTTTGGTAGAATTAATGTGAGG
AATGAAGAGAAATGCTTCTCCGTGGTTTCTCCAAAATTAACTTTTCCTGG
GTTTGAAGACATGGGAACAGTATGTGTCAGGATATGTTCAAAGATTGAAA
CTAACTCACTTCACTGATTTTTGGGGTGTTTCTTAGCTACTTGCCATTTT
CTACTTATAGATATTATCTGCCAGGCATATGTGTTCATGCTGAACAAAGT
AAAAGATCACTGTACTTTGAGAAAGTCATTCATGCTATCTAGTTTCTGGT
AGCTCTCACAGTATGGGGAACTCTTTTTAGGAGGCAGATCTGTTGTTAAC
CAATTTTCACCATTTAACGTTTTTCTTAAGATTATGAAGCATGTTTTCTA
ATCCAGTTACTTGAAATTATTTCAGATGAATGGCTTCCAGAATAATGATA
TTACTTTTTTATGTTGCAGGATGCTTTTCAATAAACCATCTTAACTATTT
ATTCCATCACTGATGGCCTAGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_c05.g1 MSMg01no061_c05.g1 CHROMAT_FILE:
MSMg01no061_c05.g1 PHD_FILE: MSMg01no061_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:02 2005
         (471 letters)



>mm_chr2_139376491_139377361
          Length = 871

 Score =  903 bits (467), Expect = 0.0
 Identities = 470/471 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgcattttcttagatttgaacttgtgatttgattaagagcattgggtgatactacagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 catgcattttcttagatttgaacttgtgatttgattaagagcattgggtgatactacagc 612

                                                                       
Query: 61  atcacatagggcattggggttatgtacaaatgatgcacttctactgtaatccagtcatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 atcacatagggcattggggttatgtacaaatgatgcacttctactgtaatccagtcatca 552

                                                                       
Query: 121 cctttgtgtgtacaggggaagaaagatgagaaaatatacattttggtagaattaatgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cctttgtgtgtacaggggaagaaagatgagaaaatatacattttggtagaattaatgtga 492

                                                                       
Query: 181 ggaatgaagagaaatgcttctccgtggtttctccaaaattaacttttcctgggtttgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ggaatgaagagaaatgcttctccgtggtttctccaaaattaacttttcctgggtttgaag 432

                                                                       
Query: 241 acatgggaacagtatgtgtcaggatatgttcaaagattgaaactaactcacttcactgat 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 acatgggaacagcatgtgtcaggatatgttcaaagattgaaactaactcacttcactgat 372

                                                                       
Query: 301 ttttggggtgtttcttagctacttgccattttctacttatagatattatctgccaggcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttttggggtgtttcttagctacttgccattttctacttatagatattatctgccaggcat 312

                                                                       
Query: 361 atgtgttcatgctgaacaaagtaaaagatcactgtactttgagaaagtcattcatgctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atgtgttcatgctgaacaaagtaaaagatcactgtactttgagaaagtcattcatgctat 252

                                                              
Query: 421 ctagtttctggtagctctcacagtatggggaactctttttaggaggcagat 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctagtttctggtagctctcacagtatggggaactctttttaggaggcagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)