BAC Information

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BAC

Clone NameMSMg01-061D23
Chromosome2 (Build37)
Map Location 103,876,963 - 103,877,344
singlet/doubletsinglet
Overlap geneFbxo3
Upstream genePdhx, Apip, Ehf, Elf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2
Downstream geneCd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061D23.T7 (MSMg01no061_d23.b1)MSMg01-061D23.TJ (MSMg01no061_d23.g1)
ACCAG287501AG287502
length619742
length of high quality
(start - end)
44 (116 - 159)382 (267 - 648)
definitionCHROMAT_FILE: MSMg01no061_d23.b1 PHD_FILE: MSMg01no061_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:10 2005CHROMAT_FILE: MSMg01no061_d23.g1 PHD_FILE: MSMg01no061_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTCCCCCCCCCCCCTTTTCCTTTTACCCCCCCCCCTTTTTATATTC
TATAATTGGGCGCTAATACGACTCCTATTCCAAGAGGACCGCGGAATTCC
AGTCTTTCCTCTCCACTGTAAACATATGGGTAAGCCGGGCTTGTGAGTGG
GTTTCTGCCTTCTCTGCCAGGACAGCGGTGCTGGTGTGTGTTGCTGGTAC
TGGCCACTCTCCCTTCCTTTTCCCCCCCTCTTCTTCCTTCCCTTCTCCCC
TCTTCCCCCCCCTTTTCCCTTCTTCTTTCCCCTTTCCTCCCTCTCTCCCT
CTATTTTTTTCCCTTCCCTCCCCCACCTTTCCCCCCCCCCCTCTTCCTTT
TTTTCCTTTTTTTTCCCCCATCCTCCTCCTTTTTCCCCCTCCTCCCCCCC
TTATACCCCCCTCTCTCTTTTTCTTTTCCCCCCCCCCTTTTTTTTTTTTC
CTTGCTCCCCCCCTTTTCCTCCTTTTATCCTACTCCTCTCCCTCTATAAA
ATTTCCTCACCCCCCCCTTTCTTTTTTCCCCCCCTCCCCTCCCCCCCTAT
TCTCCCCTCCTCTTCCCCCCCCTTCCCCCCTTTTTCTTTCCCCGTTTAAC
CCCCCTCCCTTTCATCTCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGATCCCTAGCACCCTTCAGTGCCAGG
CATTGTGCTGAGTAACTACAGTCCCAGAATGTGGACTCAGAGACATCCAT
ATCCCGAGAGGTGGCTGACCAGTCCAGCTAATAAATCAATGCGCTCCAGG
TTCAGTGAGGGACCCTGCCTCAAGAAATAGGGTGGTAGGCTXXXXXXXXX
XXXXXXXXXXXXXXXXCCTAGCACTCAGCGGGAGGCAGAGGCAGGTGGAC
CTTTTTGAGTTTGAGGCTAGCCTATTCTATAGAGAAAGTTCCAGGACAGC
CAGAGTTTTACACAGAGGAACCCTGTCTCAAAAAATAAAACAAAAGGGTA
GATGTGAGGCACATCAAGCTCTGGTCTTCACATGCACACAAGTAGGCACA
CACACTAACATGTACATATACGAACTCTGCATACACATATAAAAGAAAAG
GTAAAAAATAAAGAGTTTGATAGAAAAGAAACCAAGCTGAATAAAAGCCA
GGAGGAGTATGGTGGATAAGGAAAGAGGCTAACATTTGTATGCTATGTGC
TACATGTTAGACTACTTAATATGTAAGATTAAGAAGTAAAAACACCCCTA
GCTAACAGATAGATATAAGGGAATATATATTTACATTTCAGTAAAATTAA
GATTAGAAGAGACAATATATTATAGCAAGCCAGAATGGTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_d23.g1 MSMg01no061_d23.g1 CHROMAT_FILE:
MSMg01no061_d23.g1 PHD_FILE: MSMg01no061_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:10 2005
         (382 letters)



>mm_chr2_103876574_103877355
          Length = 782

 Score =  700 bits (362), Expect = 0.0
 Identities = 377/382 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctagcactcagcgggaggcagaggcaggtggacctttttgagtttgaggctagcctatt 60
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 771 cctagcactcagtgggaggcagaggcaggtggacctttttgagtttgaggctagcctaat 712

                                                                       
Query: 61  ctatagagaaagttccaggacagccagagttttacacagaggaaccctgtctcaaaaaat 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 711 ctatagagaaagttccaggacagccagagctttacacagaggaaccctgtctcaaaaaat 652

                                                                       
Query: 121 aaaacaaaagggtagatgtgaggcacatcaagctctggtcttcacatgcacacaagtagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aaaacaaaagggtagatgtgaggcacatcaagctctggtcttcacatgcacacaagtagg 592

                                                                       
Query: 181 cacacacactaacatgtacatatacgaactctgcatacacatataaaagaaaaggtaaaa 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 591 cacacacactaacatgtacatatacgtactctgcatacacatataaaagaaaaggtaaaa 532

                                                                       
Query: 241 aataaagagtttgatagaaaagaaaccaagctgaataaaagccaggaggagtatggtgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 531 aataaagagtttgatagaaaagaaaccaagctgaataaaagccaggaggagtatggtaga 472

                                                                       
Query: 301 taaggaaagaggctaacatttgtatgctatgtgctacatgttagactacttaatatgtaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 taaggaaagaggctaacatttgtatgctatgtgctacatgttagactacttaatatgtaa 412

                                 
Query: 361 gattaagaagtaaaaacacccc 382
           ||||||||||||||||||||||
Sbjct: 411 gattaagaagtaaaaacacccc 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)