Query= MSMg01no061_i16.b1 MSMg01no061_i16.b1 CHROMAT_FILE:
MSMg01no061_i16.b1 PHD_FILE: MSMg01no061_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:33 2005
(666 letters)
>mm_chr2_8392561_8393628
Length = 1068
Score = 1178 bits (609), Expect = 0.0
Identities = 651/665 (97%), Gaps = 4/665 (0%)
Strand = Plus / Minus
Query: 5 gaattctacagctctaccagtgctgacttcttgcaagcagggggagtactaaaggggacc 64
||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 868 gaattctgcagctctaacagtgctgatttcttgcaagcagggggagtactaaaggggacc 809
Query: 65 tcatctttgc-ggttagaaagcataaacaatatttatccaaaactaatagagaaattctt 123
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tcatctttgctggttagaaagcataaacaatatttatccaaaactaatagagaaattctt 749
Query: 124 gtggtatataagaattcatgaaaacttagtgtactctgaaacacaaagtgatggcataac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gtggtatataagaattcatgaaaacttagtgtactctgaaacacaaagtgatggcataac 689
Query: 184 aatgtggtgttaatagtgaatgtttttagagatagaaacaataataaataatcaacagca 243
|| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 688 aacgtggtgttagtagtgaatgtttttagagataaaaacaataataaataatcaacagca 629
Query: 244 actacctctctgttttgtagactaggaaagggctgaagcatactaagattcacaaaatca 303
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 actacctctctgtcttgtagactaggaaagggctgaagcatactaagattcacaaaatca 569
Query: 304 tgaaattatctgtagctaactaagaatgccaagagaggagaaagttgatatttaaaggga 363
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 568 tgaaattatctgtagctaactaagaattccaagagaggagaaagttgatatttaaaggga 509
Query: 364 cataaaaaatactcattaaccttgtacttattacattaacttaaactccatgagaatggt 423
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cataaaaaatacccgttaaccttgtacttattacattaacttaaactccatgagaatggt 449
Query: 424 tactttattaaccctgttttactttcatatttatgccaattatgtctcagagcctcc-aa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 448 tactttattaaccctgttttactttcatatttatgccaattatgtctcagagcctccaaa 389
Query: 483 aagactgttaaatgtctttaatagcatatctttgagacaattacttgatggcataatcca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aagactgttaaatgtctttaatagcatatctttgagacaattacttgatggcataatcca 329
Query: 543 gataattcaacatgggcttgcaaccagaatactaaacttaaaaagaaacaacaaaacctt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gataattcaacatgggcttgcaaccagaatactaaacttaaaaagaaacaacaaaacctt 269
Query: 603 gttgtccttggagaaattttg-atatctattctatattcatgactgctaaaattcttgta 661
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gttgtccttggagaaa-tttgaatatctattctatattcatgactgctaaaattcttgta 210
Query: 662 tcagt 666
|||||
Sbjct: 209 tcagt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1068
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1058
Effective search space: 694048
Effective search space used: 694048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_i16.g1 MSMg01no061_i16.g1 CHROMAT_FILE:
MSMg01no061_i16.g1 PHD_FILE: MSMg01no061_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:33 2005
(551 letters)
>mm_chr2_8234265_8235215
Length = 951
Score = 1011 bits (523), Expect = 0.0
Identities = 544/551 (98%)
Strand = Plus / Plus
Query: 1 aaccacaaaacaaagggaaaataactcacacgggctcaatcttttaaaatcctctgaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaccacaaaacaaagggaaaataactcacacgggctcaatcttttaaaatcctctgaaag 260
Query: 61 taaaggaagtagtgttttattttctctgattggtttatacaggagaaatctagatattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaggaagtagtgttttattttctctgattggtttatacaggagaaatctagatattct 320
Query: 121 catatttatgcatgagttttaattcccatttcttatatttgaattaaaataataccaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catatttatgcatgagttttaattcccatttcttatatttgaattaaaataataccaaag 380
Query: 181 atttggctgcaaataattgcctgaagaatgttctcttgaagaaataattgaattacataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttggctgcaaataattgcctgaagaatgttctcttgaagaaataattgaattacataa 440
Query: 241 atttcctttaaacaaaacacaaataagaactccagtgataataaaactataatgccatga 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 atttcctttaaacaaaacacaaataagaactccagtgataataaaactataatgccgtga 500
Query: 301 agtgagacattgaaattaaagatgaacatattggaaacagtgtgttatattatgtatgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgagacattgaaattaaagatgaacatattggaaacagtgtgttatattatgtatgat 560
Query: 361 tatagacattaacaatgttggttataattcatgttgtttcatttaatagccttggtatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatagacattaacaatgttggttataattcatgttgtttcatttaatagccttggtatgg 620
Query: 421 ttgccttgaaaagtaagggagatcttcactgtgtttatttaatataatgtgcacttttaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgccttgaaaagtaagggagatcttcactgtgtttatttaatataatgtgcacttttaa 680
Query: 481 aaaacgttttacacactgaaaaatggagagaaggtaaagacagcagagtgaatgatatca 540
|||| |||||| ||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 681 aaaatgttttaaacactgaaaaatggagagaagataaagacaacagagtgagtgatatca 740
Query: 541 tagaatctcac 551
|||||||||||
Sbjct: 741 tagaatctcac 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
