Query= MSMg01no061_j17.b1 MSMg01no061_j17.b1 CHROMAT_FILE:
MSMg01no061_j17.b1 PHD_FILE: MSMg01no061_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:38 2005
(509 letters)
>mm_chr2_80240234_80241151
Length = 918
Score = 936 bits (484), Expect = 0.0
Identities = 506/518 (97%), Gaps = 9/518 (1%)
Strand = Plus / Plus
Query: 1 taccatatatcatgcacatatgataacatttttttgaaactcatagatgactaactcatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taccatatatcatgcacatatgataacatttttttgaaactcatagatgactaactcatc 260
Query: 61 aaagaatagaaaagaa------gaaaggagtttttaactaggacataatataatgcatgg 114
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaatagaaaagaataagaagaaaggagtttttaactaggacataatataatgcatgg 320
Query: 115 gtagaaattttgtagtattgaatgccaagctgaacaacccagcatctcttgttgcactta 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagaaattttgtagtattgaatgccaagctgaacaacccagcatctcttgttgcactta 380
Query: 175 caggtggcatccccagatccttgaacacggcagcctgaagattttcttcctctcctaatt 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggtggcatccccagatccttgaacacggcagcctgaagattttcttcctctcctaatt 440
Query: 235 cttcaataaaagtccagcaaagacgtt---ttcaaatatacaccttttgattgcatttgc 291
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 cttcaataaaagtccagcaaagacgttgttttcaaatatacaccttttgattgcatttgc 500
Query: 292 aaatacaagctgtgtacattgatctgtgttcccctgggaaacctacacaagacttttgat 351
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatagaagctgtgtacattgatctgtgttcccctgggaaacctacacaagacttttgat 560
Query: 352 tttagattctggagtacagcataataaacttctctttccttatgtataatattttcattt 411
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 tttagattctggagtacagcataataaacttctctttccgtatgtataatattttcattt 620
Query: 412 ttctgcacattggtatgatcactaaccctctatgcacctccccaagcatgtgacagaatt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctgcacattggtatgatcactaaccctctatgcacctccccaagcatgtgacagaatt 680
Query: 472 ccctacccccagacactgtttgattacacatgataact 509
|||||||||||||||||||||||||| |||||||||||
Sbjct: 681 ccctacccccagacactgtttgattatacatgataact 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 918
Length adjustment: 10
Effective length of query: 499
Effective length of database: 908
Effective search space: 453092
Effective search space used: 453092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_j17.g1 MSMg01no061_j17.g1 CHROMAT_FILE:
MSMg01no061_j17.g1 PHD_FILE: MSMg01no061_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:38 2005
(425 letters)
>mm_chr2_80389552_80390376
Length = 825
Score = 760 bits (393), Expect = 0.0
Identities = 411/417 (98%)
Strand = Plus / Minus
Query: 9 agcaccctgcggctgccaagcttcctctggagcagcctgagaccctgctgggttaatgca 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcaccctgcggctgccaagcttcctctggagcagcctgagaccctgctgggttaatgca 566
Query: 69 gcctcaggagaccacacagggcggctgccaagcctaccctctgctccgctccagtggttg 128
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 gcctcaggagaccacacagggcggctgccaggcctaccctctgctccgctccagtggttg 506
Query: 129 gtggagattcagccaccttagaagtccttcagtccaacattcagcatgtgcagctctgaa 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtggagattcagccaccttagaagtccttcagtccaacattcagcatgtgcagctctgaa 446
Query: 189 aaccctgtcctccgggagagagcagtgacttacatcccagtcagtgaactaaagagaata 248
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 aaccctgtcctccaggagagagcagtgacttacatcccagtcagtgaactaaagagaaaa 386
Query: 249 tctcaagaaaagttagttattcagagctagaaaggtagataattgatttagtgctaagtt 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctcaagaaaagttagttattcagagctagaaaggtagataattgatttagtgctaagtt 326
Query: 309 tgcttcatcgctagatagtaatgcctttagctatgtgtgcacactataaatacataactt 368
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgcttcattgctagatagtagtgcctttagctatgtgtgcacactataaatacataactt 266
Query: 369 aaacctatatgggtttttaagaagcataacaataatggacatatatttgcttttttt 425
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agacctatatgggtttttaagaagcataacaataatggacatatatttgcttttttt 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space: 339456
Effective search space used: 339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
