BAC Information

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BAC

Clone NameMSMg01-062A06
Chromosome2 (Build37)
Map Location 7,863,469 - 7,864,103
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040648
Downstream geneLOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062A06.T7 (MSMg01no062_a06.b1)MSMg01-062A06.TJ (MSMg01no062_a06.g1)
ACCAG288089AG288090
length1,2111,178
length of high quality
(start - end)		727 (145 - 871)721 (83 - 803)
definitionCHROMAT_FILE: MSMg01no062_a06.b1 PHD_FILE: MSMg01no062_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:10 2005CHROMAT_FILE: MSMg01no062_a06.g1 PHD_FILE: MSMg01no062_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTAATGATTCATGTTCCATTAACTTCCCAGCAGGACA
TCTGCTTGTTTAAAGCTGCCTTCTGTGTCATAGACTAACCCACGTATATT
TCACAACCAAATTGTTATTTGGTGCTCTATTTACATTTGGGGTATTTGAT
CATATGACATTTCTACATATTTATCAACATCTGAGTTTTCCTTTTGCCAT
CTTATGTATGTGAGAACCCAGAATTTAGAAGATACAGTAGAAGGGAAAGT
CAGCACATTGTAACAAATATATTAGGTAGAAGGAAGAAAGGAAAGAAAGA
AAGGAAAAAAGTATCAATTAAAAAGTAGAAATATTTTTAAAAGTAGAAAT
ATTTTTAAAAGTAGAAATTTAAAAAAGTAATTTAAAACTGTTGTGTTGCT
AAGTTCTGGACAACCTCAGAGAAATATAGATCTAATCTAAATCCTGAAGA
AACAAAATAAAACCTTGTAAAGACCACCTGTGACGTTTAAGTGCTAAATA
TGGGAGTTTGGTTGTCTATACACAAAATTACTTCTTAAGCTTAAAGAACT
CAAATCTGAAGATTGGAAAATGGTAACATAACACAGTGGTAAAGTTATGC
AACAACTTAAGTTCAATCCAAGGAACCAACAGAAACTTAGGAAAACCAAC
CAACTCTACGGAGCTGTCCTCTGACCTTCATACACATCCCCTGAGTTGTA
TAGGCCCCATTAATAATTAACATTTAAATGCAAATATTTGCATAAAAATT
CATTTTTAAAAGTTACTTCATAGATTCCTAGCAATTATAATACCTACAGT
AATATGATATAAACTTTAGATATTTAAGATTTACAGAATGGAAGAACACA
AATCAAAGCAGATTTTTATATTTAACACCCCTATATACAAGTTTAAATGC
TCCGTAAATATCTTTATGAGTCACCGCAGGTTACAATCCTTGTATTGCAA
AAAGCAATTTCAGGGGGAAATGGACCCTTATTAAATTTTTAAAGGGGGAA
TTCAAAACCCTGTGTTTTCCCCCCCCAATATTAAAATTAATATGCCCCAA
ACTATAAAGTTTTTTAATAAACAAAAAATTGTTCATAAAAGAAATTTTTT
AAAGGTTTTCTCCGTGGATTATATATTTTTTATTCTCCCAGCACTCTTTT
ATTTCTTTATT

CTTTATTTTNNAAAGAGGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTTTTAAATCTGCTTCAGAGCTACTA
AGAGCTGGCTTCCTCCTTTCATCTAGTGACGAGCCCCTCCTAGAGACCTC
CGCTAATTGATCTTTTTTCTTTTCTTTTTTCTTTTCCTTCCTTCTAATCT
CTCCCCAGGTATTCTTACCTGACCTTAACTTTTCCTCGGGTTCAAGACCC
TTGGAAAGGCCTGTATACTTATTTTGTGTACCATATTTTCTCTTTGCTCC
TACTCTCTCTCCCCGCTTTACTTCTGATAGATTGTCCTGAATTTCGTCCA
GAATCCGCCCTGCCTTAACCACTTGATAACATGTGAAAAGGAACAAAAGG
TTTTCTAACACTAGAGAAAGTTCAAGGCCAAACATACCTTGTAAAGCTAT
TTTCCACTTTACTTCTGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAA
GGCCAGGCGTACCTTGTAAAGCTATTTTCCACTTTACTTCTGATAGACTG
TCTTGAATTTCCTTAGAAAGTTCAAGACCAGACTTACCTTGTAAAGCTGT
ACTCACTGGTACTTCTGTTCCCCAGCTGAAAAGTTCTGAATTCATGCAGT
TGAATCCTTCTCAACAGTCTGTTTTACGGGAACCTTTATTACCGTGACCC
GCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGCCGGTCCCGAGTTT
TCTTGTATTTTTTCGTCCCAGATTTTTTCTCGTCCCGGATTTCAGCACCA
ACTCTTATACGCGTTCTCACGACCGGCCAGGATAGATCACAACAAACCAG
AATCTTCTGCGGCAAAATTTTATTGCTTACTTCTTCAGGAGCAGGAGCGG
CAAACCCCCAACCCCAAAAACGAAAAGCCCCCTTCTTACATCTTTAGGAA
CCAGAGTGCCCGCGCGCCCAAACGAAAGCGTCAAGAAGGGGTAGGTAAAA
AAGGCTTTGGTTTACCTCTTTTTAAAACAAGGGCGCTCTAATACCTTTTT
AAAAAAGTATAAATGGGGGGAAAACCCCGCCCCCCCCTTTAGGAGGAAGG
TCATCTCTTTCTCTTAAGAAAGAATTCACTCCCCGGTTTGGGTTTTCTGC
CTTGGGTTTGGAAATATTATCNTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_a06.b1 MSMg01no062_a06.b1 CHROMAT_FILE:
MSMg01no062_a06.b1 PHD_FILE: MSMg01no062_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:10 2005
         (727 letters)



>mm_chr2_7862976_7864103
          Length = 1128

 Score = 1031 bits (533), Expect = 0.0
 Identities = 609/635 (95%), Gaps = 4/635 (0%)
 Strand = Plus / Minus

                                                                        
Query: 97   cttttgccatcttatgtatgtgagaacccagaatttagaagatacagtag-aagggaaag 155
            |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1128 cttttgccatcttaagtatgtgagaacccagaatttagaagatacagtagaaagggaaag 1069

                                                                        
Query: 156  tcagcacattgtaacaaatatattaggtagaaggaagaaaggaaagaaagaaagg--aaa 213
            |||||||||||||||||||||||||||| |||||||||||||| |||||||||||  |||
Sbjct: 1068 tcagcacattgtaacaaatatattaggtggaaggaagaaaggagagaaagaaagggaaaa 1009

                                                                        
Query: 214  aaagtatcaattaaaaagtagaaatatttttaaaagtagaaatatttttaaaagtagaaa 273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 aaagtatcaattaaaaagtagaaatatttttaaaagtagaaatatttttaaaagtagaaa 949

                                                                        
Query: 274  tttaaaaaagtaatttaaaactgttgtgttgctaagttctggacaacctcagagaaatat 333
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948  ttttaaaaagtaatttaaaactgttgtgttgctaagttctggacaacctcagagaaatat 889

                                                                        
Query: 334  agatctaatctaaatcctgaagaaacaaaataaaaccttgtaaagaccacctgtgacgtt 393
            ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| 
Sbjct: 888  agatctaatctaaatcctgaagaaacaaaataaaaccttgtgaagtccacctgtgacgta 829

                                                                        
Query: 394  taagtgctaaatatgggagtttggttgtctatacacaaaattacttcttaagcttaaaga 453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828  taagtgctaaatatgggagtttggttgtctatacacaaaattacttcttaagcttaaaga 769

                                                                        
Query: 454  actcaaatctgaagattggaaaa-tggtaacataacacagtggtaaagttatgcaacaac 512
            ||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 768  acttaaatctgaagattggaaaaatggcaacataacacagtggtaaagttatgcaacaac 709

                                                                        
Query: 513  ttaagttcaatccaaggaaccaacagaaacttaggaaaaccaaccaactctacggagctg 572
            | ||||||||||||||||||||||| ||| |||||| |||||||||||||||| ||||||
Sbjct: 708  taaagttcaatccaaggaaccaacaaaaagttaggagaaccaaccaactctacagagctg 649

                                                                        
Query: 573  tcctctgaccttcatacacatcccctgagttgtataggccccattaataattaacattta 632
            ||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct: 648  tcctctgaccttcatacacatccccggacttgtataagccccattaataattaacattta 589

                                                                        
Query: 633  aatgcaaatatttgcataaaaattcatttttaaaagttacttcatagattcctagcaatt 692
            |||||||||| ||||||||||||  |||||||||||||||||||||| |||||||||| |
Sbjct: 588  aatgcaaatacttgcataaaaatggatttttaaaagttacttcataggttcctagcaact 529

                                               
Query: 693  ataatacctacagtaatatgatataaactttagat 727
            |||||||||||||||||||||||||||||||||||
Sbjct: 528  ataatacctacagtaatatgatataaactttagat 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 7
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 727
Length of database: 1128
Length adjustment: 10
Effective length of query: 717
Effective length of database: 1118
Effective search space:   801606
Effective search space used:   801606
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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