Query= MSMg01no062_a07.b1 MSMg01no062_a07.b1 CHROMAT_FILE:
MSMg01no062_a07.b1 PHD_FILE: MSMg01no062_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:10 2005
(766 letters)
>mm_chr2_137399697_137400863
Length = 1167
Score = 1151 bits (595), Expect = 0.0
Identities = 613/619 (99%), Gaps = 1/619 (0%)
Strand = Plus / Minus
Query: 1 cactttaaaattgaagacatactgtgtatgaccccagatgtgtgaaaacccacaaagtaa 60
||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||
Sbjct: 619 cactttaaaattgaagacatactgtgtatgaaaacagatgtgtgaaaacctataaagtaa 560
Query: 61 ccagttcaccaaatactacttgcctactttctgtgtgcccagaccctacctgttctaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ccagttcaccaaatactacttgcctactttctgtgtgcccagaccctacctgttctaagt 500
Query: 121 tggggattcaaaagtaagtagaggagaaaataaagattcctctgaagagcttctgtttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tggggattcaaaagtaagtagaggagaaaataaagattcctctgaagagcttctgtttct 440
Query: 181 gcagggtaggcctgtgattaaataagaaattaaaatgaggtaaagtattatgaacattat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gcagggtaggcctgtgattaaataagaaattaaaatgaggtaaagtattatgaacattat 380
Query: 241 gagaaatagtaaagattcctcagggtatgagagtaagaggcaagtgtatcctgggggaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gagaaatagtaaagattcctcagggtatgagagtaagaggcaagtgtatcctgggggaag 320
Query: 301 aagttctatct-aaccaaagcccagggtgaggtagatatgatttatacaagcaataaaga 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aagttctatctaaaccaaagcccagggtgaggtagatatgatttatacaagcaataaaga 260
Query: 360 aagaacactcagacaaaatgatcagtatgtataaaagtataaaagcatgcaggcagaaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aagaacactcagacaaaatgatcagtatgtataaaagtataaaagcatgcaggcagaaaa 200
Query: 420 gagagagagagagagagagagagagagagagagagagagagagagagagagagagacctt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gagagagagagagagagagagagagagagagagagagagagagagagagagagagacctt 140
Query: 480 gaagacattcaccttgaaatggcaaagaatgaaagaggaagaacatgggctttggggagg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 gaagacattcaccttgaaatggcaaagaatgaaagaggaagaacatgggctttggggagg 80
Query: 540 aaatgtccatgaagtaccatgatggtcagtgatgctgaacaatggataatcgttcaactt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 aaatgtccatgaagtaccatgatggtcagtgatgctgaacaatggataatcgttcaactt 20
Query: 600 catccccaaagcagcagca 618
|||||||||||||||||||
Sbjct: 19 catccccaaagcagcagca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 104
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 766
Length of database: 1167
Length adjustment: 10
Effective length of query: 756
Effective length of database: 1157
Effective search space: 874692
Effective search space used: 874692
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_a07.g1 MSMg01no062_a07.g1 CHROMAT_FILE:
MSMg01no062_a07.g1 PHD_FILE: MSMg01no062_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:10 2005
(814 letters)
>mm_chr2_137249975_137251185
Length = 1211
Score = 1450 bits (750), Expect = 0.0
Identities = 797/814 (97%), Gaps = 3/814 (0%)
Strand = Plus / Plus
Query: 1 gaaggaaactcaggattagatcaatgtgacagtgccggaatccctgaggagcccactagc 60
|||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 201 gaaggaaactcaggcttagatcaatgtgacagtgttggaatccctgaggagttcactagc 260
Query: 61 aataatatagccatagttgagactctgggatattggcaatgccaggacagggaaatgagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataatatagccatagttgagactctgggatattggcaatgccaggacagggaaatgagc 320
Query: 121 acaaagatcagtggaaaaggtagagagaaacagtcctaatcctaacataaaggccatgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaagatcagtggaaaaggtagagagaaacagtcctaatcctaacataaaggccatgtg 380
Query: 181 tgctacggagagctggagaaatagagctgtgcaagcattttggagtcctaaagatttagt 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctatggagagctggagaaatagagctgtgcaagcattttggagtcctaaagatttagt 440
Query: 241 tggttctgatgtgccctgattcttccctcttggaacaaggaaatatgtaactttaaaatg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tggttctgatgtgccctgattcttccctcttggaacaaggaaatatgtaacttttaaatg 500
Query: 301 tattttagaggaacccaaagttaagtgactgtatttttatagagataagcttttaaagtg 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 tattttagaggaacccaaagttaagtgactgtatttttataaagataagcttttaaagtg 560
Query: 361 ttggattaaaactcttttttgagacttatgtatgagcaatgcatatacatcttttctacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttggattaaaactcttttttgagacttatgtatgagcaatgcatatacatcttttctacc 620
Query: 421 cttaccttcctttattaatagttctgctatgagcattcctgcacaaatctaccatgaaat 480
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttactttcccttattaatagttctgctatgagcattcctgcacaaatctaccatgaaat 680
Query: 481 ttattggaatatgcctgctggttttttaaagtaagtatacatttatctttagagaataag 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 ttattggaatatgcctgctggttttttaaagtgagtatacatttatctttagagaataag 740
Query: 541 ttcaaagaacctttcaaagtcatgtcaagtgctatatacatgctgcttagaagtgaatga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcaaagaacctttcaaagtcatgtcaagtgctatatacatgctgcttagaagtgaatga 800
Query: 601 atcttctcatgtcctttctattctcattgaaatctaatagagattgtgcttttattttac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atcttctcatgtcctttctattctcattgaaatctaatagagattgtgcttttattttac 860
Query: 661 tattttttcatgtgtttaaaaataaattgaaataatagcaatataatccaaaaaaaaaaa 720
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 861 tattttttcatgtgtttaaaagtaaattgaaataatagcaatataatccaaaaaaaga-- 918
Query: 721 agctgagtatccacatcagcaaagccactcctcacttcccaatcctatcacttagttaca 780
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 919 -gctgagtatccacatcagcaaagccactcctcacttcccaatcctatcacttaattaca 977
Query: 781 ctacaacaacaaagaagctgttttatatgatggc 814
||||||||||||||||||||||||||||||||||
Sbjct: 978 ctacaacaacaaagaagctgttttatatgatggc 1011
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 814
Length of database: 1211
Length adjustment: 10
Effective length of query: 804
Effective length of database: 1201
Effective search space: 965604
Effective search space used: 965604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
