BAC Information

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BAC

Clone NameMSMg01-062C18
Chromosome2 (Build37)
Map Location 93,768,017 - 93,895,884
singlet/doubletdoublet
Overlap geneGm1335, LOC620695, Alkbh3, Hsd17b12
Upstream geneSyt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967
Downstream geneE530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062C18.T7 (MSMg01no062_c18.b1)MSMg01-062C18.TJ (MSMg01no062_c18.g1)
ACCAG288209AG288210
length1,1941,181
length of high quality
(start - end)		686 (122 - 807)735 (122 - 856)
definitionCHROMAT_FILE: MSMg01no062_c18.b1 PHD_FILE: MSMg01no062_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:29 2005CHROMAT_FILE: MSMg01no062_c18.g1 PHD_FILE: MSMg01no062_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,895,199 - 93,895,884)(93,768,017 - 93,768,736)
sequence
CGTTCTATTTNNAAACATTGGCGCNATAGACTCCATAGGGAGAGGATCCG
CGGAATTCTCCAGGTCAAATTGGCCCTTAAAATCTCGNTCATTCTCCTCT
TTGTGTAGGAAAGCCTTAAACAGCTGCTCTCCCGAGCTCCACTTAGCTAC
TCTTCATTAACAGGTCTTACTTCCTTAATACAGATGGATACACATGTAAG
GGCACACACATGCATGCATGTATGCACACACGAGAAAGCACACTTTTAAA
GTTCATCTTCATTTTCCTCACTTCTGTTTCTGGTGAACTCGGGGCTTTGG
GAAACTGAGTAATAATAACTTCTATGAAAATGTTTGGAGACAATTTCCTA
ATATTTTAGCTAAGCATTACGGTCCCCTAGTGAAATGTGCAAATAGAGTC
TCTTTCAGATACAGTTGCTTGCTGGTTAGCTTGGTTAGTCAGAGTGTAAT
GCTCATAAATACAGACCATTTTCAGATACTCTTAAGGTTGCATTCGTCCT
TTGCAGTGAAATACTCCACAGTATGCCTGTGTGAATGACTTGTGTGAATG
TCTGACCCTGATGTTTTCTACTGATGCAGGTTACATGATGCATCTAACCA
GTTGTACATATTTTTCTTACATCTCTTTATTTTTTTAATACATCAAACAA
AGAAGTCTAGTAATTCAATAGAAAATATTTATTCCTTCATGGTTTGCTTT
TTTGCATTTGTTCCTTTTGGCATTTATTTACTGCCAAGTGATCTCCTGTT
TATGCTTTTATAACTTAACCAAAACAGTCTATGAAGCTCTGCCTGGCTTC
TAGCTCTAAGTGCTCCTTTCCCTAAGCACTAGTGCCCCCTGTCTGCTCAT
AGAAGCATCTCATTATGGGTCCTGAGTTCTTCCCTCCCAACCTAGTGGCT
GCAGATAAAACCGGATAGCTCCTTAATCAAAGCTGTTGCTTCCAGTTTCC
CGTTGAAATGCAGAAAATATTTTTATGCCCTTTTTACCTCCTGAGGTTTT
GTAAAACATTGATTTCCACTTCCTTGGTACTATCCCCCCTTTTATTTTTA
AGAGGGTCTCCTTTAATCCTTATGTAATTTTGTAAAACCCCTCTTCTCTT
TGAGAGTCCCAGTTTTTTGTTTCTTTTTTGTGTTTCGAGTGTAAAATATA
AAAGAGTTTTATTTCCCTCTTCGTTTCTCTCTTTCATTATTTTA

NCGTCTTTTTNTNAAATCATGTGAGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAGCACGTGCCANTCCTCCTT
TTGTCATTTCTGATCCTTTAATATCCATCTAACCCCATGCCGGTTCCTTT
GGCCCGAGATTCCATTCCCTTTCATCCTTGAGTACAAGAGAGTGTTTGAA
AGCTTCTACTTGATTCTTTCTATTCAGCCTTCTTATTATGAAAATTGTCC
ACATATACAGAAGAAAACAAACTGAAAGAACACCCACACGCTGTATTCAT
TGGTTCCAGCAACTACCTGAACTCAGGGTCAGCCAGCGCTGTTCTCCACC
CCCACTGCTGCATCCCCTCAAGATGAACTGCTCAGCAAACACCAAGCAGC
CTTCCACTTCACCTGCAAATGCTCTCTCTTTAAAAACAAGGACTCTGTCT
TTAAACAGAACTTCAGTGTCTACCAGGAAAGAAGAAACAACAGCAGTGAC
TCATTCCGGCGTCACTAATCTCACCAGCATCCACGTTTCCCCAGTGCCGT
TGCTTTTCTTGGGACTTACTCGATTAAAGTGGGAAGGCTTTCTATACTGT
TGCTGGCTAATCTATTGCTTACGTTTCTGTAGATTTTTCTCTTCCATTTC
CCCCCTTTGCATTTGTCGCTGTCATTTATTGAAGCAACAGTCAGGGTTGT
GCTGACTGTACCCTGCTTGTGGTTTCATGTGCTCTTTAGTTCTGTGGTGA
CAGATTCCGATCTGTTTAAATTCAAATCTGATTCTTTGGCAAGACTATTG
CAAAGGTGATGTGGCGTTTTCTATTGGGAAGCGTGCTCCCTCTGGACTGA
ACTCAGACTGAAGGCCACTGCCAAGACCTTCATTAGAGCGTGGCATTAAC
AGCATGTTGTGATGCCCCGCATGTTGTGATGCCAACCCTTGAAAGGCTGA
TGTGGGTGGATTATCNATTCCAGGTTCCCCTGGGTCCCACCTGGAGAACT
CTGCTCCCACTAAAACAAAAGACCCAATAATTTTTTGAAGGGGAAACCTT
TCTCCCCCAAATCTTTTTTTGCCCCGAAAGAGTGGTTTTAATAAAACAAA
GTTTTCTCCTCTCTCATAATATTTTCAGGTGAATTTGTTTCTTTTTTGCC
TTCCCTCTCAGGGGGTTTCTTTTTGTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_c18.b1 MSMg01no062_c18.b1 CHROMAT_FILE:
MSMg01no062_c18.b1 PHD_FILE: MSMg01no062_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:29 2005
         (686 letters)



>mm_chr2_93894999_93896084
          Length = 1086

 Score = 1241 bits (642), Expect = 0.0
 Identities = 675/686 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctgctctcccgagctccacttagctactcttcattaacaggtcttacttccttaatac 60
           ||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 886 agctgctcttctgagctccacttagctactcttcgttaacaggtcttacttccttaatac 827

                                                                       
Query: 61  agatggatacacatgtaagggcacacacatgcatgcatgtatgcacacacgagaaagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 agatggatacacatgtaagggcacacacatgcatgcatgtatgcacacacgagaaagcac 767

                                                                       
Query: 121 acttttaaagttcatcttcattttcctcacttctgtttctggtgaactcggggctttggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 acttttaaagttcatcttcattttcctcacttctgtttctggtgaactcggggctttggg 707

                                                                       
Query: 181 aaactgagtaataataacttctatgaaaatgtttggagacaatttcctaatattttagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aaactgagtaataataacttctatgaaaatgtttggagacaatttcctaatattttagct 647

                                                                       
Query: 241 aagcattacggtcccctagtgaaatgtgcaaatagagtctctttcagatacagttgcttg 300
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 646 aagcattacggtcccctagtgaaatgtgcaaatagagcccctttcagatacagttgcttg 587

                                                                       
Query: 301 ctggttagcttggttagtcagagtgtaatgctcataaatacagaccattttcagatactc 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ctggttaccttggttagtcagagtgtaatgctcataaatacagaccattttcagatactc 527

                                                                       
Query: 361 ttaaggttgcattcgtcctttgcagtgaaatactccacagtatgcctgtgtgaatgactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttaaggttgcattcgtcctttgcagtgaaatactccacagtatgcctgtgtgaatgactt 467

                                                                       
Query: 421 gtgtgaatgtctgaccctgatgttttctactgatgcaggttacatgatgcatctaaccag 480
           ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 466 gtgtgaatgtctgaccctgatgtcttctacagatgcaggttacatgatgcatctaaccag 407

                                                                       
Query: 481 ttgtacatatttttcttacatctctttatttttttaatacatcaaacaaagaagtctagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttgtacatatttttcttacatctctttatttttttaatacatcaaacaaagaagtctagt 347

                                                                       
Query: 541 aattcaatagaaaatatttattccttcatggtttgcttttttgcatttgttccttttggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 346 aattcaatagaaaatatttattccttcatggtttgcttttttgcatttgttccttctggc 287

                                                                       
Query: 601 atttatttactgccaagtgatctcctgtttatgcttttataacttaaccaaaacagtcta 660
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 286 atttatttactgtcaagtgatctcctgtttatgcttttataacttaaccaaaacagtctg 227

                                     
Query: 661 tgaagctctgcctggcttctagctct 686
           ||||||||||||||||||||||||||
Sbjct: 226 tgaagctctgcctggcttctagctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no062_c18.g1 MSMg01no062_c18.g1 CHROMAT_FILE:
MSMg01no062_c18.g1 PHD_FILE: MSMg01no062_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:29 2005
         (735 letters)



>mm_chr2_93767802_93768936
          Length = 1135

 Score = 1315 bits (680), Expect = 0.0
 Identities = 710/720 (98%)
 Strand = Plus / Plus

                                                                       
Query: 16  atgccggttcctttggcccgagattccattccctttcatccttgagtacaagagagtgtt 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atgccggttcctttggcccgagattccattccctttcatccttgagtacaagagagtgtt 275

                                                                       
Query: 76  tgaaagcttctacttgattctttctattcagccttcttattatgaaaattgtccacatat 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgaaagcttctacttgattctttctattcagccttcttattatgaaaattgtccacatat 335

                                                                       
Query: 136 acagaagaaaacaaactgaaagaacacccacacgctgtattcattggttccagcaactac 195
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 336 acagaagaaaacaaactgaaagaacacccacacgctgtattcattcgttccagcaactac 395

                                                                       
Query: 196 ctgaactcagggtcagccagcgctgttctccacccccactgctgcatcccctcaagatga 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctgaactcagggtcagccagcgctgttctccacccccactgctgcatcccctcaagatga 455

                                                                       
Query: 256 actgctcagcaaacaccaagcagccttccacttcacctgcaaatgctctctctttaaaaa 315
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 456 actgctcagcaaacaccaagcagccttccacttcacctgcaaatgttctctctttaaaaa 515

                                                                       
Query: 316 caaggactctgtctttaaacagaacttcagtgtctaccaggaaagaagaaacaacagcag 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 caaggactctgtctttaaacagaacttcagtgtctaccaggaaagaagaaacaacagcag 575

                                                                       
Query: 376 tgactcattccggcgtcactaatctcaccagcatccacgtttccccagtgccgttgcttt 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tgactcattccggcgtcactaatctcaccagcatccacgtttccccagtgccgttgcttt 635

                                                                       
Query: 436 tcttgggacttactcgattaaagtgggaaggctttctatactgttgctggctaatctatt 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tcttgggacttactcgattaaagtgggaaggctttctatactgttgctggctaatctatt 695

                                                                       
Query: 496 gcttacgtttctgtagatttttctcttccatttcccccctttgcatttgtcgctgtcatt 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gcttacgtttctgtagatttttctcttccatttcccccctttgcatttgtcgctgtcatt 755

                                                                       
Query: 556 tattgaagcaacagtcagggttgtgctgactgtaccctgcttgtggtttcatgtgctctt 615
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tattgaagcgacagtcaaggttgtgctgactgtaccctgcttgtggtttcatgtgctctt 815

                                                                       
Query: 616 tagttctgtggtgacagattccgatctgtttaaattcaaatctgattctttggcaagact 675
           |||||||| | |||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 816 tagttctgcgttgacagattccgatctgtttaaattcaagtctgactctttggcaagact 875

                                                                       
Query: 676 attgcaaaggtgatgtggcgttttctattgggaagcgtgctccctctggactgaactcag 735
           |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 876 attgcaaaggtgatgtggtgttttctattgggaagcgtgccccctctggactgaactcag 935


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 735
Length of database: 1135
Length adjustment: 10
Effective length of query: 725
Effective length of database: 1125
Effective search space:   815625
Effective search space used:   815625
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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