BAC Information

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BAC

Clone NameMSMg01-062F01
Chromosome2 (Build37)
Map Location 48,787,368 - 48,787,705
singlet/doubletsinglet
Overlap geneOrc4l
Upstream geneLOC383691, LOC100041457, LOC383692, Acvr2a
Downstream geneLOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062F01.T7 (MSMg01no062_f01.b1)MSMg01-062F01.TJ (MSMg01no062_f01.g1)
ACCAG288318AG288319
length1,1481,132
length of high quality
(start - end)		767 (92 - 858)527 (91 - 617)
definitionCHROMAT_FILE: MSMg01no062_f01.b1 PHD_FILE: MSMg01no062_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:46 2005CHROMAT_FILE: MSMg01no062_f01.g1 PHD_FILE: MSMg01no062_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTATCCNNNNNNGATCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTATTTAGGTCTATCCCCTTAAGTTGAATAATCTATC
CATATCTATTCAATATAGCCTTTTAAATTTTGTCAAGAGCAATAGGAAAA
CTAAAGGAGATCAAGGGGATACAAACTGGGAAGAAAGAAGTCAAAGTATC
ACTATTTGCAGACGATTTGATAGCATACATAAGTAACCCAAAAAAATTAT
ACTAGGGAACTCCTACAGCTAATAAATATACTCAGCGAAGTGGCTGGATA
CAGAATTTAAAAAAAAATAGTAGCTCTCATATATACAAACAATAAACTAG
CTAAGAAAGAAATCAGGGTAACAACACCCTTCACAATTTGGTGGAGCTCT
ACCCAAGCAAGTGAAAGACCTGTAGGACAAGAACTTCAAGTCTTTGAAGA
AAGAAATTGAAAAAGATAGAAAAATCTCCCATGCTCATGGATCGGTAGGA
TTAACATAGTAAAAATGGCCATCTTACCAAATGCAATCTACAGATTCAAT
GCAATTTCCATAAAAAATCCCACACAATTCTTTATAGACCTTGAAAGAAC
AATACTCAACTTCATATGGAAAAACAAAAAATGTAGGATAGCTAAAACAA
TTCTGTACAATGAAAGAACTTCCAGAGGTATCAGCATCTCTGATTTCAAA
CTGTACTACAGAGCTATAGTAATAAAAAAATGCATGGTATTAGCGTAAAA
ACAGACCAGGTGATTGATGGAATCTTATAATCTTTATGGCCTATCTTTTG
AGATGATCCCTGAGTCACTATGGGGAGGAATGTGATATAAAAGTCTAATT
TACGTTTGAGAAGTTCACAGGCACTTATGCTCTGGACTTTGACCAGTTGA
ATCTCTGGATTGACTGCCATTCATTGCAAAGATAGAAGGAAAGAAGGGAA
GGAAGAAGGAAGAAAGAAGGAAGAGAGGGAAGAGGAAGAGAGGGAAGGTA
TTTTTTCTCTCTCTTTCTCTCTTTTCCTCCCTCTTCTTTTTCTTCTTTCT
CTTTCTTTTTCTCTCTCCTTTTCTTTCCTCTCTTCCTTTCCTTCCTTCTC
CCCTTTTTCCTTTTTTCCTCTCCTCTTTCCTTTCCTTTTTTATCTTTN

CCGTTCTTTTNNNTTAACATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAATTACACTGTGTAGCAA
ATGATCTGTGGGGGGCCTAATTCTAATGTCCCTACATGGATATATTAGTA
CTGTATTTGTGTAAATTCATGAAAGAGGCAGTTGTATTACAATCTCAGTC
CAATCACGGCTATTGTGATTATCATGAAAGTCAGTCCTTTGTATATTTAG
GTCCGATATCTGTATATGCAACCAATATCAAACTGAAGATATTCAAGAAA
AATAAATGCATTTATGCTAAGCTTGGACAGACTTTGGGTTTTTTTTTTTG
TTTGGTTTTTGGTTTTTGTTGTTGTTGTTGTTTTTTCCGAGGCAGGGTTT
TTTTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGAACAGGCTGGC
CTCGAACTCAGTAATCCACCTGCCTCTGCCTCCCGAGTGCTTGGATTAAA
AGAGTGCGCCACCACGCCCGGCTTTGTATTTTGTTTTTATATTTTTAAAT
AATACATTAGAAGAGCTAATAAATAATATCTAGATAATATTTTTAGGTTG
CTTTCTGTTTCTTTAATCTATTAATCAAAACTAATCTGGCGAACACAGGG
TTAATAATCTGGCTAACTGCTTCCAGATTATAGGAATTCATTCAGGATCA
TAGGTTGTATCCTTGTATTAACTCATGTCCATCTGCCCAGGATTACATCT
GCTCTTAGTGATTTGTTTTCCATATGTAATTATTCCTTTGTCAAAGGGCT
TTTATTATTTGCCCTTATTTCATTTTGATTCAACCTTTTTTTTTTTCATA
TTTTCTTTTCCCAATATCTGTGTAAATTTTGGTTCTATTATGTCAATCTT
TATTATGATTTCCTTTATCTCTCTCTATTTATCTTTTTTATTTTTTTTTC
TTCGTTTGTTTCTTTTTCCTTCCTCTTTTTTCCCTTTTCTTATTTTCTTT
CTCTTTTTCGCTCTTGTTTTTTTTTATTTCTTCTTCTTTTTCCGTTTTTA
TATTTTTTTTTATTTTTCTTCTTCTACTTTTTTTTATTTTCTTCTTCTCT
TTTCTTTATCTTTTATTTTTTCTTTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_f01.g1 MSMg01no062_f01.g1 CHROMAT_FILE:
MSMg01no062_f01.g1 PHD_FILE: MSMg01no062_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:47 2005
         (527 letters)



>mm_chr2_48787368_48788294
          Length = 927

 Score =  567 bits (293), Expect = e-166
 Identities = 325/339 (95%), Gaps = 7/339 (2%)
 Strand = Plus / Minus

                                                                       
Query: 3   tgtagcaaatgatctgtggggggcctaattctaatgtccctacatggatatattagtact 62
           |||||||||||||||||||||||  |||||||||||| |||| |||||||||||||||||
Sbjct: 338 tgtagcaaatgatctgtgggggggttaattctaatgttcctagatggatatattagtact 279

                                                                       
Query: 63  gtatttgtgtaaattcatgaaagaggcagttgtattacaatctcagtccaatcacggcta 122
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 278 gtatttgtgtaaattcatgaaagaggcagttgtattacaatctcattccaatcacggcta 219

                                                                       
Query: 123 ttgtgattatcatgaaagtcagtcctttgtatatttaggtccgatatctgtatatgcaac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ttgtgattatcatgaaagtcagtcctttgtatatttaggtccgatatctgtatatgcaac 159

                                                                       
Query: 183 caatatcaaactgaagatattcaagaaaaataaatgcatttatgctaagcttggacagac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 caatatcaaactgaagatattcaagaaaaataaatgcatttatgctaagcttggacagac 99

                                                                       
Query: 243 tttgggtttttttttttgtttggtttttggttt------ttgttgttgttgttgtttttt 296
           |||||| ||||||||||||||||||||||||||      |||||||||||||||||||||
Sbjct: 98  tttggg-ttttttttttgtttggtttttggtttttgttgttgttgttgttgttgtttttt 40

                                                  
Query: 297 ccgaggcagggtttttttgtatagccctggctgtcctgg 335
           |||||||||||||| | ||||||||||||||||||||||
Sbjct: 39  ccgaggcagggtttctctgtatagccctggctgtcctgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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