BAC Information

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BAC

Clone NameMSMg01-062H05
Chromosome2 (Build37)
Map Location 117,159,601 - 117,160,089
singlet/doubletsinglet
Overlap geneRasgrp1
Upstream geneLOC433464, Tmco5, LOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik
Downstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062H05.T7 (MSMg01no062_h05.b1)MSMg01-062H05.TJ (MSMg01no062_h05.g1)
ACCAG288422AG288423
length1,1871,203
length of high quality
(start - end)
656 (139 - 794)494 (126 - 619)
definitionCHROMAT_FILE: MSMg01no062_h05.b1 PHD_FILE: MSMg01no062_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:03 2005CHROMAT_FILE: MSMg01no062_h05.g1 PHD_FILE: MSMg01no062_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATCTTTTNTNNAACCAATGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCTCACCTGAGGAATACCCCATAAAAGACCCGCACTTGAAA
AAAGGNTCAANATCCTTCCTTTAAAAGCACATGCCCCCCAAAACAACCCT
GAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTT
CCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCC
TGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
TAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACA
CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTA
GCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTC
ACAAAGAAATTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCC
AAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAAC
TCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTT
GGGAACAAAACACCCATGGAAGGAGTTACAGAGACGGAGTTTGGAGCTGA
GATGAAAGGAAGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCA
TATTCAGCATCCAAACGCTTGACCCCTTGCATACACTAGCCAGATTTTAT
TGAAAGGACGCAAATGTAACTGTCTCTTGTGAGACTATGCCGGGGCCCCA
CAAACCCAGAAGTGAATGCTCACCGTCCGCTAATGGATGGATTATAGGGC
TCCCAATGGAGGAGCTAGAAAAAAGAGCCAAGGGATCTAAAGGGATTTGC
AACCCCTATAGTGGGAACAAATTTATGAACTTATCCGGTACCCCGGAAAC
TTTTGAACCTTGCTTGGCTATATATTCACAAAAAGGCCCCTATACGGCCT
TTCCCTGGTAAAAAAATGGCCTTTTGGATTTGTGTAT
CGATTTTTNNNTAAACAAGGNAGGCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCATCAAGGACCAGGCTTCAAGGAC
AGCTGTGGCTTACCCCCTTAAAATTGTTATCACCCCCAGGTAAGGCTTTG
TATATGTGACCTTATATATGTGGCTTGGTGCCTGCAGGTGTCAGTGCTAA
GGACCCATCTGGGTCATAGAGCGTGGTGTGGTGCCTGTCTCCTGTACACC
TTGCCTCAGTGTGCAGAGTTAAAGCTGCAGAGAGATGAGGAACATCCAAC
CTTCACTTTGCTGTGGAGGGGACAGCGGTTCCAGCAAGCATGTGTTTGCC
CTTACTCAGCTCCAGTCTCAAAGACTGTAATTCCTTAAGGTCTATAAGGA
GTTTAGTATTCAACTAGCCCATAGTACAGAAACTACTCTTACTGGTTTTA
GGGTCTTTCTAGTTTGGGAAACATTAGTACAATGCATACACATAGAAACT
TACAAATATAAGTTTGACTCGATTAACTTCAACCAGACAGTTGATGGTAT
AAAGGTGAAGTCTGACTATTTCTTGCACTGAACGGAATGTGGTTTCTAAC
TGAGGGAGACCAGGCCTGCAGACTACCAAGCACAGGTTGCCAGCCTACCT
TGTGCAACACAAAATCTGAAATCTCTTCTGAGGCTATGAGGCCTATCTTG
GGAAGTGAGGCACATCTGCACGAGCTCAGGGTACAAATAGCTGCTGGTGG
TAGAGGCAGAAGAAAAAGGCAGCCTGTTTTCTATTTAGATGGTGGGTACA
GGGTGTGTTGTTTCAGATCTCAAATGCCTCACTTTTTCTCTTGTTCACCC
AATGGAGATAATAATTACTTGACCTACCTCAGGGTTGTTTTGGATATAGA
ATAATAATTTATTCCTTTTGAATCTCCTATAAATAAAATTAACTCTTCTT
ATAATATAATCCATTTTGTATGCCTTGTTCCTTGTCCTTTGAATTTTCCT
ATTTTGTAATCTTAAATAAATTGTTTGTTTACGTGGTTTNTTTGAAAGTA
CTATATTGATACTGTTTTCTCTGATGGCAATCAAAAATTTTTTTTGTTCC
CCTTAAGTATATAATTTTCATTTCCTCCTGTTAATATTGTGTGGATATTT
CTCATTTTTTTCTCTTTGGTCTCTCTAGTGGATTTTATAAATCATCTCTT
TTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_h05.g1 MSMg01no062_h05.g1 CHROMAT_FILE:
MSMg01no062_h05.g1 PHD_FILE: MSMg01no062_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:03 2005
         (494 letters)



>mm_chr2_117159401_117160289
          Length = 889

 Score =  886 bits (458), Expect = 0.0
 Identities = 483/494 (97%), Gaps = 5/494 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttatcacccccaggtaaggctttgtatatgtgaccttatatatgtggcttggtgcctgc 60
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttatcagccctaggtaaggctttgtatatgtgaccttatatatgtggcttggtgcctgc 260

                                                                       
Query: 61  aggtgtcagtgctaaggacccatctgggtcatagagcgtggtgtggtgcctgtctcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtgtcagtgctaaggacccatctgggtcatagagcgtggtgtggtgcctgtctcctgt 320

                                                                       
Query: 121 acaccttgcctcagtgtgcagagttaaagctgcagagagatgaggaacatccaaccttca 180
           ||||||||||||||||||||||||||||||||     |||||||||||||||||||||||
Sbjct: 321 acaccttgcctcagtgtgcagagttaaagctg-----agatgaggaacatccaaccttca 375

                                                                       
Query: 181 ctttgctgtggaggggacagcggttccagcaagcatgtgtttgcccttactcagctccag 240
           ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 376 ctttgctgtggaggggacagcggttccagcaagcacgtgtttgcccttcctcagctccag 435

                                                                       
Query: 241 tctcaaagactgtaattccttaaggtctataaggagtttagtattcaactagcccatagt 300
           ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 436 tctcaaagactataattccttaaggtctataaggagcttagtattcaactagcccatagt 495

                                                                       
Query: 301 acagaaactactcttactggttttagggtctttctagtttgggaaacattagtacaatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 acagaaactactcttactggttttagggtctttctagtttgggaaacattagtacaatgc 555

                                                                       
Query: 361 atacacatagaaacttacaaatataagtttgactcgattaacttcaaccagacagttgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atacacatagaaacttacaaatataagtttgactcgattaacttcaaccagacagttgat 615

                                                                       
Query: 421 ggtataaaggtgaagtctgactatttcttgcactgaacggaatgtggtttctaactgagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggtataaaggtgaagtctgactatttcttgcactgaacggaatgtggtttctaactgagg 675

                         
Query: 481 gagaccaggcctgc 494
           ||||||||||||||
Sbjct: 676 gagaccaggcctgc 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 889
Length adjustment: 10
Effective length of query: 484
Effective length of database: 879
Effective search space:   425436
Effective search space used:   425436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)