Query= MSMg01no062_i12.b1 MSMg01no062_i12.b1 CHROMAT_FILE:
MSMg01no062_i12.b1 PHD_FILE: MSMg01no062_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:13 2005
(503 letters)
>mm_chr2_65874032_65874934
Length = 903
Score = 874 bits (452), Expect = 0.0
Identities = 492/508 (96%), Gaps = 10/508 (1%)
Strand = Plus / Minus
Query: 1 atcagatgagccatgagttgtcatta---tacccttcgttttaataaaaccacatgcagt 57
|||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct: 703 atcagatgagccatgagttgtcattatggta---gtcgttttaataaaaacacatgcagt 647
Query: 58 ctggaagaaaggagataaagacttttattttggaccgtcataccagtataatctctggga 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ctggaagaaaggagataaagacttttattttggaccgtcataccagtataatctctggga 587
Query: 118 ttctggtgatgtgggaggatcataccatatctcccaccattcacagaaa-acacaggatt 176
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 586 ttctggtgatgtgggaggatcataccatatctcccaccattcaca-aaatacacaggatt 528
Query: 177 aggggagcctctttaaattttcta-tacagcatgttccacatccaaggatactgctctga 235
|||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||
Sbjct: 527 aggggagcctctttaaattttctact-cagcatgttccacatccagggatactgctctga 469
Query: 236 ccagccaacgtgaagggtgacagcttcacagagaacagaaaataggaaaggtcttttgct 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ccagccaacgtgaagggtgacagcttcacagagaacagaaaataggaaaggtcttttgct 409
Query: 296 ggtacttagtataatattgccagtcccaaggttgggaaccagtgtgtgttgtattcaatg 355
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 408 ggtacttagtataatattgccagccccaaggttgggaaccagtgtgtgttgtattcaatg 349
Query: 356 tagtagtgatgggagaggaatttatgggtaagtatagcagatgctatagggaggaccatg 415
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 348 tagtagtgatgggagaggaatttatgggtaagtatagcagatgctagagggaggaccatg 289
Query: 416 acaaagcccctgagatcaaggtggtaccagttgcagcagcaatgtggtgctcagccttgc 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 288 acaaagcccctgagatcaaggtggtaccagttgcagcagcaatgtggtgctcagccttac 229
Query: 476 ttgccaacttatgggaactggaattagc 503
||||||||||||||||||||||||||||
Sbjct: 228 ttgccaacttatgggaactggaattagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_i12.g1 MSMg01no062_i12.g1 CHROMAT_FILE:
MSMg01no062_i12.g1 PHD_FILE: MSMg01no062_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:13 2005
(708 letters)
>mm_chr2_65725297_65726404
Length = 1108
Score = 1307 bits (676), Expect = 0.0
Identities = 700/708 (98%)
Strand = Plus / Plus
Query: 1 accacatatccattcacagctactaaggtccttttccaaaataaaccgacctggatgaga 60
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 201 accacatatccattcacagctactaaggtagttctccaaaataaaccgacctggatgaga 260
Query: 61 ttacccaagggatgaacgaggaatttgtgggtagtttatgaaaacgtgtttaaaagttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacccaagggatgaacgaggaatttgtgggtagtttatgaaaacgtgtttaaaagttaa 320
Query: 121 ataacacctgtcagtcaactaataacaaataatctaaagagaaggtcacaagcttaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataacacctgtcagtcaactaataacaaataatctaaagagaaggtcacaagcttaaaaa 380
Query: 181 gaggtagcttcattcaaataatttggggggttatctaatgactgatgccaatttatacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggtagcttcattcaaataatttggggggttatctaatgactgatgccaatttatacaa 440
Query: 241 cattatagtttcaggcatctatacttacagacaagaaatacatgagaaatataaagaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattatagtttcaggcatctatacttacagacaagaaatacatgagaaatataaagaaaa 500
Query: 301 gtcatctaaatgtttgagtatgggaaaaattaatacacaaaaggataataaatttaaata 360
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 gtcatctaaatgtttgagtaagggaaaaatgaatacacaaaaggataataaatttaaata 560
Query: 361 cattgttttaatagccttattattaacatttcttcatttttattacattcatatcataag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattgttttaatagccttattattaacatttcttcatttttattacattcatatcataag 620
Query: 421 ccgtgctgacaagatagattcatgagaatctatagaaagtaagaatgttttatatgctca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccgtgctgacaagatagattcatgagaatctatagaaagtaagaatgttttatatgctca 680
Query: 481 cgtgacaactacacaatatatctttgattagcacttatgctgaacttttttgttattcct 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catgacaactacacaatatatctttgattagcacttatgctgaacttttttgttattcct 740
Query: 541 ttaaaaaataaaatatctataatagtcatatcttgatgttagttttgggaggtaaattca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttaaaaaataaaatatctataatagtcatatcttgatgttagttttgggaggtaaattca 800
Query: 601 aatctcctaccttaatataatatgaaatggttgattggagattatttaggttttttttaa 660
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 801 aatctcctaccttaatataatatgaaattgttgattggagattatttaggtttttttaaa 860
Query: 661 agaacttatgaatctgatggattttaaatctttcttggatttttttcc 708
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 agaacttatgaatctgatggattttaaatctttcttggatttttttcc 908
Score = 219 bits (113), Expect = 8e-61
Identities = 125/129 (96%)
Strand = Plus / Minus
Query: 391 tcttcatttttattacattcatatcataagccgtgctgacaagatagattcatgagaatc 450
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 129 tcttcatttttattacattcatatcataagccatgctgacaaaatagattcatgagaatc 70
Query: 451 tatagaaagtaagaatgttttatatgctcacgtgacaactacacaatatatctttgatta 510
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 69 tatagaaagtaagaatgttttatatgctcacatgacaactacacaatatatctttgacta 10
Query: 511 gcacttatg 519
|||||||||
Sbjct: 9 gcacttatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space: 766404
Effective search space used: 766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
