Query= MSMg01no062_j16.b1 MSMg01no062_j16.b1 CHROMAT_FILE:
MSMg01no062_j16.b1 PHD_FILE: MSMg01no062_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:22 2005
(763 letters)
>mm_chr2_48827516_48828677
Length = 1162
Score = 1382 bits (715), Expect = 0.0
Identities = 751/767 (97%), Gaps = 9/767 (1%)
Strand = Plus / Minus
Query: 1 taacaagaaaaagaactcattatctgaacctataagcgtgaga----cccccaccaaatt 56
|||||||||||||||||||| ||||||| || |||||||||| |||||||||
Sbjct: 962 taacaagaaaaagaactcatcatctgaaattagaagcgtgagaaaat----caccaaatt 907
Query: 57 ataacttttgcagagtaactattcttttcataaaaatccggagataaaaggagaaaaaat 116
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 ataacttttgc-gagtaactattcttttcataaaaatccggagataaaaggagaaaaaat 848
Query: 117 aatttcttaaaaggaagtttcaccttctttctacaaataagaattttaggaataacatgt 176
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 847 aatttcttaaaaggaagtttcacctactttctacaaataagaattttaggaataacatgt 788
Query: 177 ttaacatgataatacccactgaactgtttaatttttcctttaagaaaagatatacagatg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ttaacatgataatacccactgaactgtttaatttttcctttaagaaaagatatacagatg 728
Query: 237 aacattaagaattttatcatacagaggaataattaagtaatactaaaaatattctagcat 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 aacattaagaattttatcatacagaggaataattaagtaatactaaaaatattctagcat 668
Query: 297 aggaatgctatttctgacttgtccactggacacctgttttcttgtatgtccttccatatg 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aggaatgctatttctgacttgtccactggacacctgttttcttgtatgtccttccatatt 608
Query: 357 ttataaaattgaaatgtgtatgtaggttacagggcacagcaaggggaggagcattgaact 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ttataaaattgaaatgtgtatgtaggttacagggcacagcaaggggaggagcattgaact 548
Query: 417 gggagctgaaaaggctgctcctagaactggagtgggagtagcgtatggagcagtaaagca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gggagctgaaaaggctgctcctagaactggagtgggagtagcgtatggagcagtaaagca 488
Query: 477 gcagttcacaaagtgtcattaaacagagactcaaagcgacccaggaaaggcagtgctgag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gcagttcacaaagtgtcattaaacagagactcaaagcgacccaggaaaggcagtgctgag 428
Query: 537 gctgagcgccgcacactcccaccagcctcttggagtggacaccacggcccgagcgctaac 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gctgagcgccgcacactcccaccagcctcttggagtggacaccacggcccgagcgctaac 368
Query: 597 agggaacgctgggcattctaaagcatcagtctagaaaattacgtgttttccaaagtttgc 656
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agggaactctgggcattctaaagcatcagtctagaaaattacgtgttttccaaagtttgc 308
Query: 657 gagcatagtcaagcccacccacagatcatttttcattcaggcattattagatccccagag 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gagcatagtcaagcccacccacagatcatttttcattcaggcattattagatccccagag 248
Query: 717 tcaaatgacttcagtaatcttcagaaaaatgaccttgcatatcatgt 763
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tcaaatgacttcagtaatcttcagaaaaatgaccttgcatatcatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 763
Length of database: 1162
Length adjustment: 10
Effective length of query: 753
Effective length of database: 1152
Effective search space: 867456
Effective search space used: 867456
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_j16.g1 MSMg01no062_j16.g1 CHROMAT_FILE:
MSMg01no062_j16.g1 PHD_FILE: MSMg01no062_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:22 2005
(643 letters)
>mm_chr2_48670331_48671375
Length = 1045
Score = 1216 bits (629), Expect = 0.0
Identities = 641/645 (99%), Gaps = 2/645 (0%)
Strand = Plus / Plus
Query: 1 caagtgagaaagtcatggtttgtggccataacactcgatgacagcgctggttgggttgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtgagaaagtcatggtttgtggccataacactcgatgacagcgctggttgggttgct 260
Query: 61 gttcaagccgcaaataccacaagtgaaaatttatgtaaaggtttgagacccaaaaggagg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 gttcaagccgcaaataccacaagtgaaaatttatgtaaaggtttgagacccagaaggagg 320
Query: 121 tattccaaaatgtcatttagcctaagctgttccaaaacaaggaccggttttggtcgtcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattccaaaatgtcatttagcctaagctgttccaaaacaaggaccggttttggtcgtcat 380
Query: 181 ctaattagtgcttcaccggtgaatatcgagacatagatcaagtgagctggtgtttaattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaattagtgcttcaccggtgaatatcgagacatagatcaagtgagctggtgtttaattt 440
Query: 241 tgactgtgagaaacaatgcatcctatcagcgatttaatctaggtctcctctcacgtcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgactgtgagaaacaatgcatcctatcagcgatttaatctaggtctcctctcacgtcttc 500
Query: 301 tccaactacattgtccagtagtgttaaaaatagttttagttgccggagtattaaccctaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccaactacattgtccagtagtgttaaaaatagttttagttgccggagtattaaccctaa 560
Query: 361 cccagtgcagaagaggtatgctgctgtgtgttggtggtgtgtgctggctttcacccacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccagtgcagaagaggtatgctgctgtgtgttggtggtgtgtgctggctttcacccacca 620
Query: 421 tttgggtgctcttttcaggcgtagattctgcttacctacggaatacttattttaaacgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgggtgctcttttcaggcgtagattctgcttacctacggaatacttattttaaacgct 680
Query: 481 ttgcaccgacacgttgttttcagttaagagcaggccatgtgaaattgtgttcatgttaaa 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 ttgcaccgacacgttgttttcagttaagaacaggccatgtgaaattgtgttcatgttaaa 740
Query: 541 tatgctgttcttgtgagatgtatttctttttctttt-tttt-ttttaactcaaggttagg 598
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 741 tatgctgttcttgtgagatgtatttctttttcttttcttttcttttaactcaaggttagg 800
Query: 599 agaatactctggccattttatatctgaaaaatttgattatgtgaa 643
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agaatactctggccattttatatctgaaaaatttgattatgtgaa 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1045
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1035
Effective search space: 655155
Effective search space used: 655155
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
