Query= MSMg01no062_o21.b1 MSMg01no062_o21.b1 CHROMAT_FILE:
MSMg01no062_o21.b1 PHD_FILE: MSMg01no062_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:02 2005
(734 letters)
>mm_chr2_178319997_178321130
Length = 1134
Score = 1286 bits (665), Expect = 0.0
Identities = 719/739 (97%), Gaps = 6/739 (0%)
Strand = Plus / Plus
Query: 1 cccctaactggcctttctggagagacagtggcgaagctcaagtgactcccagctctacag 60
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 201 cccctaactggcctttctggagagacagtggtgaagctcaagtgactgagagctctacag 260
Query: 61 ggatcctgatgccaccagcggttgatatcaaagtgacccgacatgggtttgcagacttcc 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ggatcctgatgccaccagcggttgatatcaaagtgacccgacataggtttgcagacttcc 320
Query: 121 aaaccaggaggaggtattgggagaggctgcatctgtgtccaccactctctctctcttccc 180
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacttggaggaggtattgggagaggctgcatctgtgtccaccactctctctctcttccc 380
Query: 181 attcccattaaaagataaagcaaccttgatccctttatctagttgtctttctaggctctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcccattaaaagataaagcaaccttgatccctttatctagttgtctttctaggctctg 440
Query: 241 cccatgctgggtagtttttgtttgtttgtttgttt----ttaattaacttgacacaagcc 296
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 cccatgctgggtagtttttgtttgtttgtttgtttgtttttaattaacttgacacaagcc 500
Query: 297 acggttatctagaacaagagaccttctattgagaaaaagcctccactggattgccctgtg 356
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 acggttatctagaacaaaagaccctctattgagaaaaagcctccactggattgccctgtg 560
Query: 357 ggtaaatgtatagggtgttagccttgatggatgactgatgtgggagggcccagccagtgt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtaaatgtatagggtgttagccttgatggatgactgatgtgggagggcccagccagtgt 620
Query: 417 gtgtggtgccagcccagggtaggcagtcctgggttatataagaaggtggctgagaaaacc 476
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgtggtgccagcccagggcaggcagtcctgggttatataagaaggtggctgagaaaacc 680
Query: 477 gggggagcaagccagtagtagtgttcatccatggcctctgcatcggctcctgcctcctgg 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggggagcaagccagtagtagtgttcatccatggcctctgcatcggctcctgcctcctgg 740
Query: 537 ttcctgccttgagttccctccatgaaagtctgtaacatgtatattaaataaaccctttgc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcctgccttgagttccctccatgaaagtctgtaacatgtatattaaataaaccctttgc 800
Query: 597 tcttcaagccagtgttggttgtagcctttcatcacagtgatagaaaccaaactgagatc- 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 801 tcttcaagccagtgttggttgtagcctttcatcacagtgatagaaaccaaactgaga-ca 859
Query: 656 ctacccgcctctcaaaatcctctgtgctacttgttccttgcttctctctattggccctgg 715
||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 860 ctacctgcctctcaaaatcctctgtgctgcttgttccttgcttctcactattggccctgg 919
Query: 716 aaggggccaaagagtggtt 734
|||||||||||||||||||
Sbjct: 920 aaggggccaaagagtggtt 938
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 734
Length of database: 1134
Length adjustment: 10
Effective length of query: 724
Effective length of database: 1124
Effective search space: 813776
Effective search space used: 813776
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_o21.g1 MSMg01no062_o21.g1 CHROMAT_FILE:
MSMg01no062_o21.g1 PHD_FILE: MSMg01no062_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:02 2005
(760 letters)
>mm_chr2_178415957_178417116
Length = 1160
Score = 1046 bits (541), Expect = 0.0
Identities = 556/561 (99%)
Strand = Plus / Minus
Query: 200 actgctgtgctttctaatttgctcttcatggccgaccaacccctccatgccagagtctca 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1160 actgctgtgctttctaatttgctcttcatggccgaccaacccctccatgccagagtctca 1101
Query: 260 gccttggcactcctgacctttgggttgctgttagtcctgaggcctcctgggctctatgga 319
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 1100 gccttggcactcctgacctttgggttgctgtcagtcctaaggcctcctgggctctatgga 1041
Query: 320 aggctgagaagcactgcctggctcctcttccctcggggccagcattagcccctcctagct 379
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1040 aggttgagaagcactgcctggctcctcttccctcggggccagcagtagcccctcctagct 981
Query: 380 acaataaccaaaatgtcttccctgggaagagaataagccaaccacggtatttattccctg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 acaataaccaaaatgtcttccctgggaagagaataagccaaccacggtatttattccctg 921
Query: 440 ataaatactgcctcgggttaaacagagatggatcctcacagagccacccagtgagagcca 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 ataaatactgcctcgggttaaacagagatggatcctcacagagccacccagtgagagcca 861
Query: 500 ggaggatgtgttgatgtggcaatgagcctactgcccttccgtgtccttcgtgaagatttc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 ggaggatgtgttgatgtggcaatgagcctactgcccttccgtgtccttcgtgaagatttc 801
Query: 560 agatttactcagacagttaggagggcaatccgatgagtgtgtgtgcacatgtgtatgtgc 619
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 800 agatttactcagacagttaggagggcagtccgatgagtgtgtgtgcacatgtgtatgtgc 741
Query: 620 aaggacactcacaggtgtttgcttaaggggcattgactgtgtggcagccagagagaccca 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaggacactcacaggtgtttgcttaaggggcattgactgtgtggcagccagagagaccca 681
Query: 680 cccttcaggtcagggacctagtttacaaccagactctcgggaacaccttcctctaattgc 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cccttcaggtcagggacctagtttacaaccagactctcgggaacaccttcctctaattgc 621
Query: 740 tacgaaatggggagggggaca 760
|||||||||||||||||||||
Sbjct: 620 tacgaaatggggagggggaca 600
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 760
Length of database: 1160
Length adjustment: 10
Effective length of query: 750
Effective length of database: 1150
Effective search space: 862500
Effective search space used: 862500
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
