BAC Information

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BAC

Clone NameMSMg01-063A17
Chromosome2 (Build37)
Map Location 167,128,665 - 167,128,972
singlet/doubletsinglet
Overlap geneB4galt5
Upstream genePpia-ps2_2197.1, BC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951
Downstream geneSlc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063A17.T7 (MSMg01no063_a17.b1)MSMg01-063A17.TJ (MSMg01no063_a17.g1)
ACCAG288876AG288877
length685658
length of high quality
(start - end)
316 (43 - 358)190 (142 - 331)
definitionCHROMAT_FILE: MSMg01no063_a17.b1 PHD_FILE: MSMg01no063_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:15 2005CHROMAT_FILE: MSMg01no063_a17.g1 PHD_FILE: MSMg01no063_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTGATTCACCCAGCCTGGCTAGCACTGAACTCCAGGCAGAGAGCTGC
CCGCGACTCTCCTCCGCCCAGTGCTGGGGTTATAGACACAGCGGGGCCAG
CTTTTACATGGCTTCTTGGAGATCCAAACCCAAGTCCCCCGTCCTGCAAG
CTTGGCACTTACCGCCTGAGCCACCTTCCCAGCCCCTCAGACAGGAAGGG
ATGCTAGTTAATCCTCTGTGGAGCGTCCCATGCCGGGGGTGCCATCCTCT
GTTCACACGGGCAGCATTTCTCCAGATTAACCAAATGTTTACTGTGATAT
ACAGTCAAAATCACATTATGACACGCGTGGCTCAGGAAGGGAACCTTTTC
CTAGCATGCACTAGCCCTGACTGCTCTCTCTCTCTCCCTCCCTCCCTCTC
CCTCTTAAAAACTGAGAGAAAACCTGGAGCTGGCTCAGTTGTTAAAGTGC
TGGCTTTGATCTCTGAAACCATGTTTCTTGTTTGTTTAAAGGCACTGAGA
GTGGTGGCTCTATCTATCAGTTACTTTTCTGTTGCTGTGATAAAACACCA
AGGCCAAGGTGACTTCTAGAGGGGTGAATGTATTCTGGCCTAGGGCTGCA
GAGGATTAGAGTCATCATGGCCAGCAGGCAAGCGG
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXANTGTCTTAAGGACAGGNCANGTGAGGAA
GGAGGGGCCTACCTGGGCCTCAATGGGCTGANCCGTGGNGNAAACCTGTG
TCAGGCCTANAAATANCAAAATAAGTCTGTTGATCCTAAGCCGGCTAAGG
ACGAGTACCTTTCGTCTTAAAGGNAGGCTTTCTGGACACGNAAACTGGNN
AAGGATTATGGTCTCANCCTTCCAGGAGGAGACCAAGCCCAAAGGCGAGA
GAAAAATGACTATGGNCTCTATCTGCTGTCCTACTAAACACCCTTCCTGT
GNCAACTTGTTTCTTTTTCACCCACCCAACTCTTTGGAATAAACCTACAA
ATCGTTGTNCCCGGGGGTGGGGGGGGGGTGGGTNCNNCACCACACCCCCA
CCCTTCATACCCCCCAACCTACACCCTTCTCCCCCCAAAACCCTNCCTAT
AAAAAACACATACAACCACNAAGGGGGGTGGTGGGTTCCTCTTTCCTCCC
TATCCACCCCCACCANACAANCCCCNCCACAAAATTTCTTTCTCCTTTTT
TTCCTCCCAACTCATTCCATCTATCATCTATTGCGCGGGTCTTTTGCTTT
NTTTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_a17.b1 MSMg01no063_a17.b1 CHROMAT_FILE:
MSMg01no063_a17.b1 PHD_FILE: MSMg01no063_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:15 2005
         (316 letters)



>mm_chr2_167128271_167128982
          Length = 712

 Score =  511 bits (264), Expect = e-149
 Identities = 300/314 (95%), Gaps = 7/314 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtgattcacccagcctggctagcactgaactccaggcagagagctgcccgcg 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 702 ggaattcagtgattcagccagcctggctagcactgaactccaggcagagagctgccctcg 643

                                                                       
Query: 64  actctcctccgcccagtgctggggttatagacacagcggggccagcttttacatggcttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 actctcctccgcccagtgctggggttatagacacagcggggccagcttttacatggcttc 583

                                                                       
Query: 124 ttggagatccaaacccaagtcccccgtcctgcaagcttggcacttaccgcctgagccacc 183
           ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 582 ttggagatccaaacccaaggcccc-gtcctgcaagcttggcacttaccgcctgagccacc 524

                                                                       
Query: 184 ttcccagcccctcagacaggaaggga-tgctagttaatcctctgtggagcgtcccatgcc 242
           ||||||||||||||||||| |||| | ||||||||||||||||| |||| ||||||||||
Sbjct: 523 ttcccagcccctcagacagaaagg-agtgctagttaatcctctgcggagagtcccatgcc 465

                                                                       
Query: 243 gggggtgccatcctctgttcacacgggcagcatttctccagattaaccaaatgtttactg 302
           ||||||||||||||||||||||| ||||||||||||||||||||||    ||||||||||
Sbjct: 464 gggggtgccatcctctgttcacatgggcagcatttctccagattaa----atgtttactg 409

                         
Query: 303 tgatatacagtcaa 316
           ||||||||||||||
Sbjct: 408 tgatatacagtcaa 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 712
Length adjustment: 9
Effective length of query: 307
Effective length of database: 703
Effective search space:   215821
Effective search space used:   215821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)