BAC Information

Click to search

BAC

Clone NameMSMg01-064A15
Chromosome2 (Build37)
Map Location 78,769,788 - 78,770,178
singlet/doubletsinglet
Overlap genenone
Upstream geneBC003993, LOC667920, OTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3
Downstream geneLOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c, Pde1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064A15.T7 (MSMg01no064_a15.b1)MSMg01-064A15.TJ (MSMg01no064_a15.g1)
ACCAG289622AG289623
length1,2751,272
length of high quality
(start - end)
313 (480 - 792)386 (70 - 455)
definitionCHROMAT_FILE: MSMg01no064_a15.b1 PHD_FILE: MSMg01no064_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:39 2005CHROMAT_FILE: MSMg01no064_a15.g1 PHD_FILE: MSMg01no064_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAATCCTNNNNNNGGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATAGTTAGAAGNAAACCCGATAAAATCCCCNAAAATAT
AAAGCCCTGANGNAAGNTCCCTTTAAAAAATTAANTAAAANAAATCCAAG
GTTTAAACTGAAAACTATAAAACCTATTTATAAGATAGTCCTGGGGAACA
TTTCCAGAGTATAGAAATTGATGAACATTTTGTAGACTTGATCCAAAAGA
GCAAAATCCAGAGATGTAAAATTAATCAATTAATAGTACATTATTGAAAT
TAAATGTTTTTCACTCTGTGAGAGATTCTGTTAAAAGAATGAAAAGGCAC
AATACATGAGATATTTGCAAACAGACAAATGTTCACCAAGCTCACTTAAA
AATCAATAGTATTTTTTATCCAATTACAAACTGTGAGGAAAGGCAGGAAA
ACACAACTTCCTCAAGAGGACACATACACAGCAAGTAATCATGGGAGAAA
GGCACCTCTACTGAAAAACTCCAAATGAAGACTACTATGAGATAGACATC
CTGAAATGTAAAATGGCAATTATAAAGTGACCATTCTGAACGCTAGCAAG
GATACAGAAAGACTTCATCTTTTACATGTTGCTGATGAGAATGTGGCTGC
CACATTGGAAGAGAGTTCTATTTCTTAAGATAATTTAACAGATATTGGAC
AATGCAGCAGTTTCACTCCTGGGCATTTGTCCCAGAGAAACAAACCATTA
TTATTATTTATTCGTAATAGCCTTAGCTGGAATGCTACTCAGCAGTAAAA
GGGAATGAACTATTGACAGGCACAGATTAGATGGATCTCAAGGACATTGA
AACAAGTCAAACAATCCTAAAAAAGGCCTATGAAGTGAGTCCATTGATGT
GTTCTTCTTGTAATGGCCAATACATAGGGAAGGAAAAACAATTACTGGTT
GTCAAGAGGGTTAGGGGTTGGGAACATTCATTGGGGGAACAGGGTGGTTG
GGGAGGGAAAATTGTGATGTTTTTCCTTCTTCTCTTTTTTCTCTCGTATT
AATCATTTCTCCTTCACTAATCTTTTTTCATTTCTTTTTATTATCTACAC
TATTCTGTACTTTATGATACTTTGTCCATTATTATCTTTGTACTTCTTTT
ATTCATGTTCCTTTTACTAACTTCTAATTTCTATAAATCTTTTACCATCA
TCTTCAATGTCCATATTTTCTCTACTCTACAGTACCTTCTCTTTGTATAT
CCTATCATATCTCTCCTATATTCTA
NNAATAGTAGAGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAATCTTCAGAGCTGAGACAAAAATAAGCAA
ACAAAGGCAACGAAAAGGATAGGTCACACCCCCAGAGACCAGGCAAAACC
ATGTCCTACAGTGGGGCGTCAACTCAATGTCATTTTCTTACATTGGCTCT
CCAAATAATTTACAATGCCCATTGTTTTGCCACTACAATCTTCTCTGGCA
CTACATTTTTACATTTTTGCAGAGCTGTTCATTGGTCTTAGCTCAACTAC
GTAACTGTAAAAAGTAAAAAAAAAAAAAAAAAAAATCAGATTCCAAGAAG
TAGGAAAAAATATCCTATAGAAGATAGTAAATAAAACTGGTGGTAAGACT
GTTTTGTCCATGAAGTTCAGCTTACTAAAGACCCAGAAATAAGTATCAGC
TATCCTTTTACTCCCCCCCCCCCCCTAGGTATAGATAACATTACTACAAT
GGTTTACTGAGCATACACTGAAATTTAGAAGTTATGTTTGTTCCTTCCAA
AGGAAACTCTCAAGTATGACAGGATGCAACCTCAGTAATGTTTTCATAAA
TGCATACTGTGATTTCTTTATTGCAGGGTAGGTTTTGATAGCAATTTAAG
AGTCACGGGCCAGGCCCCAGTTTTCAAACTAAGGCTCCTAAACCTGCTTT
GTAAAATAAGCAGATTCTGGTCATTTTCAGAAGCCATCCATCATCCTGGG
AGCGGGTGATGGGTTGAAAGGTATAGTACCACTTGTATAAGCTAGTCTTC
CAGCTCCATTTTCTGTGTTTTGAAATAATTTCCAGATGTGTTCAAAACTG
TAAATGCTAAAGAGGAGGCAACCTTTAAAAGACCAAACCCTGGCATGTTA
TGAGATGAATCTAAATGTGGTTAAAGCCCCCCTGGAACATGTGTTTAATT
TTCAAAAATGAAATTTAAGGCCACCTCTCCCAAATTATTAACCCCCCCCC
CTGTGGGACCCTTGGTTTTCCCGGGGAAGGGGTTCTTTCCCCCCTTAACA
TGGTATTTATATTTCCCTATATAACCAAAAATTTGTTTTTATTAAAATTT
TCTCCTTCTAATCTTCATTTCTCAAAGTTCTTAATAAAGCGCCTCCTTTT
TGGAGGGCTCCCTTTAATTTGTGTGACAAAAATCTGATTTTTAGAACCTC
TCTACTCTACTCTTATTTTTCCTCTCTAATACTCTTCTTCTCTCCCTAAT
ACATCCATAACTCCTGTAAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_a15.g1 MSMg01no064_a15.g1 CHROMAT_FILE:
MSMg01no064_a15.g1 PHD_FILE: MSMg01no064_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:40 2005
         (386 letters)



>mm_chr2_78769740_78770525
          Length = 786

 Score =  702 bits (363), Expect = 0.0
 Identities = 382/391 (97%), Gaps = 5/391 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatcttcagagctgagacaaaaataagcaaacaaaggcaacgaaaaggataggtcacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caatcttcagagctgagacaaaaataagcaaacaaaggcaacgaaaaggataggtcacac 380

                                                                       
Query: 61  ccccagagaccaggcaaaaccatgtcctacagtggggcgtcaactcaatgtcattttctt 120
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agtcagagaccaggcaaaaccatgtcctacagtggggcgtcaactcaatgtcattttctt 320

                                                                       
Query: 121 acattggctctccaaataatttacaatgcccattgttttgccactacaatcttctctggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 acattggctctccaaataatttacaatgcccattgttttgccactacaatcttctctggc 260

                                                                       
Query: 181 actacatttttacatttttgcagagctgttcattggtcttagctcaactacgtaactgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 actacatttttacatttttgcagagctgttcattggtcttagctcaactacgtaactgta 200

                                                                       
Query: 241 aaaagt-----aaaaaaaaaaaaaaaaaaaatcagattccaagaagtaggaaaaaatatc 295
           ||||||     |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aaaagtaaaaaaaaaaaaaaaaaaaaaaaaatcagattccaagaagtaggaaaaaatatc 140

                                                                       
Query: 296 ctatagaagatagtaaataaaactggtggtaagactgttttgtccatgaagttcagctta 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 139 ctatagaagatagtaaataaaactggtggtaagactgttttgtccatgaagttcagttta 80

                                          
Query: 356 ctaaagacccagaaataagtatcagctatcc 386
           |||||||||||||||||||||||||||||||
Sbjct: 79  ctaaagacccagaaataagtatcagctatcc 49


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)