Query= MSMg01no064_e09.b1 MSMg01no064_e09.b1 CHROMAT_FILE:
MSMg01no064_e09.b1 PHD_FILE: MSMg01no064_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:04 2005
(683 letters)
>mm_chr2_138516151_138517232
Length = 1082
Score = 899 bits (465), Expect = 0.0
Identities = 503/517 (97%), Gaps = 5/517 (0%)
Strand = Plus / Minus
Query: 168 atatatatacctctgctgggatatattttttctaaaataagtttccttactaattcaagc 227
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1076 atatatatacctctgctgggatatattttttctaaaataagtttccttacgaattcaagc 1017
Query: 228 atgtttttgttgctgttttctgtattccaagttggctttgatctcactatgtccagtcag 287
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1016 atgtttttgttgctgttttctgtattccaagttggctttgatctcactatgttcagtcag 957
Query: 288 gttggtctcaaactcatagcaatcctgctgcctctctgtctgctaagtctgggatctctg 347
|||||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 956 gttggtttcaaactcacagcaatcctgctgc--ctctgcctgctaagtctgggatctctg 899
Query: 348 gtgtgaggtaccatgctgcccttagctattatatcacatatgtttgcagtatctctcaaa 407
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gtgtgagataccatgctgcccttagctattatatcacatatgtttgcagtatctctcaaa 839
Query: 408 ggaggaaatattgtctcttacacaggcttcaggtgcatcaaaattcttgaccctcagcca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ggaggaaatattgtctcttacacaggcttcaggtgcatcaaaattcttgaccctcagcca 779
Query: 468 acaagagacttaaactaactggatccccaggctaacaggctccttccccttcctgagtac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 acaagagacttaaactaactggatccccaggctaacaggctccttccccttcctgagtac 719
Query: 528 tcttaactgttcctgtctttttctgccctgaccttacttcgggggtgggaaggaagcaga 587
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 718 tcttaactgtccctgtctttttctgccctgaccttacttcaggggtgggaaggaagcaga 659
Query: 588 cccttacactcatg-gtgtaagtgtgcaggctcctactcaggtatgggagagacagatcc 646
|||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 658 cccttacact--tgtgtgtaagtgtgcaggctcctactcagatatgggagagacagatcc 601
Query: 647 cagtacttagccttccttcaggctctaacatacctca 683
|||||||||||||||||||||||||||||||||||||
Sbjct: 600 cagtacttagccttccttcaggctctaacatacctca 564
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1082
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1072
Effective search space: 721456
Effective search space used: 721456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no064_e09.g1 MSMg01no064_e09.g1 CHROMAT_FILE:
MSMg01no064_e09.g1 PHD_FILE: MSMg01no064_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:04 2005
(384 letters)
>mm_chr2_138365759_138366542
Length = 784
Score = 673 bits (348), Expect = 0.0
Identities = 374/384 (97%), Gaps = 4/384 (1%)
Strand = Plus / Plus
Query: 1 tgttggcaattatgatgttattaggaaaggtttaaattccaattgaaggaaaacaaacca 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tgttggcaattatgatgttatcaggaaaggtttaaattccaattgaaggaaaacaaaaca 260
Query: 61 caacaaaaatttaaaagcttgtggtgacattttaaatttgcaaacaaaacccatcccaga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacaaaaatttaaaagcttgtggtgacattttaaatttgcaaacaaaacccatcccaga 320
Query: 121 tcccatgggtaatgccttgcatgttgagagaccttttaaaataaatgtcaccggtgaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccatgggtaatgccttgcatgttgagagaccttttaaaataaatgtcaccggtgaaca 380
Query: 181 gacagggcctccatcagtctagtgagcccaagcactttgcaaaagacaggctatagctct 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 381 gacagggcctccatcagtctagtgagcccaagcactttgcagaagacaggctacagctct 440
Query: 241 gagaaagagatttgctgggagtgttgtcatttggggttctggctagattggaggcttcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaaagagatttgctgggagtgttgtcatttggggttctggctagattggaggcttcca 500
Query: 301 tgg--actctgagggctgctacaggtaacactgattgaagtctttaagtgccatcagagc 358
||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 tgggtact--gagggctgctacaggtaacactgaatgaagtctttaagtgccatcagagc 558
Query: 359 ctaggcaaatgggattagaacctt 382
||||||||||||||||||||||||
Sbjct: 559 ctaggcaaatgggattagaacctt 582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space: 290625
Effective search space used: 290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
