BAC Information

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BAC

Clone NameMSMg01-065B18
Chromosome2 (Build37)
Map Location 94,846,165 - 94,846,653
singlet/doubletsinglet
Overlap genenone
Upstream geneAlkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
Downstream geneLOC100042843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065B18.T7 (MSMg01no065_b18.b1)MSMg01-065B18.TJ (MSMg01no065_b18.g1)
ACCAG290397AG290398
length691696
length of high quality
(start - end)
549 (66 - 614)495 (65 - 559)
definitionCHROMAT_FILE: MSMg01no065_b18.b1 PHD_FILE: MSMg01no065_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:31 2005CHROMAT_FILE: MSMg01no065_b18.g1 PHD_FILE: MSMg01no065_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXCTATTTCCGAGGAGCCGCGGAATTCTT
TGTTTTCTCTGAGACCCAATTTTTAATGGGGTTATTCGATTTTCTGAAGT
CCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAT
TTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTT
ATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCC
ATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGG
AATTTTTCTCCTGTGCCCATATCTTCAAGGCTTTTCCTCACTTTCTCCTC
TATAAGTTTCAGTGTCTCTGGTTTTATGTGAAATTCCTTGATCCACTTAG
ATTTGACCTTATTACAAGGAGATAAGTATGGATCAATTCGCATTCTTCTA
CATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTT
CTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATATA
TGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGT
CTGTCTCTATACCAGTACCATGCAAGTTTTATCACATTGGCTCTGTAGAA
TAGTTTTAGGTCAGGCTTGGTGATTCCACCAAAGGTTCTTT
GAAGTGGGAGGCCTGGCGGCCGCCTGTTTCCAAAATATGAGGTGAACTAT
AGAAGTTTCAGCGGAATTCCTTCCTTTGTCCCTCCAGATGTATTCTCCTC
CCTTTCCTTCTCTCATGGTTTTGCCCCAGAACATTAACCTGCCTACATTA
TGTACACTAGCTCCTAGTTCCTGTCAGGTATGACTGATGAGAAGACAGGA
GAATGTATTTGTTCCTTTTTATGTTCTTGAGAAATGACTGAGTCTGTGAA
AGACTCATTGTTTTTCTCAAGGTAGTCTGATTTTCACAAGTTTGTTATTG
GGAGCTTTTATTGTTATTTTTCTTGTACTATACTCTCTCTAAATTGGGGA
GCAGTTCAGTTCCTACAGTACCCATCAGTGTTCCCCTGCTTCTTGCCACA
TCTTTCCAAATACATAACCCTAGAATATCTCTCTCTCTCTCTCCCTCTCT
CTGGAATATCATAGAACCTCACTGACTCTTGATAACGTGTAGCTGGGCAT
GTTCATATCAGAATAGTTTTCTCACATGGTACAGACAGTGGTTTTTAAAA
TATGGTTTAGTAATTTTAAAATGATACTTTGTTGTTTGACAAATTGATAT
ATATTTTGATTATATTTACCCTACCTCTCCTATCCGCCCCTATATCCATT
TTCTACATCCTTGCCATGCACCCTAACTTTGAGTTTCATTCTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_b18.g1 MSMg01no065_b18.g1 CHROMAT_FILE:
MSMg01no065_b18.g1 PHD_FILE: MSMg01no065_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:31 2005
         (495 letters)



>mm_chr2_94845965_94846859
          Length = 895

 Score =  853 bits (441), Expect = 0.0
 Identities = 479/495 (96%), Gaps = 6/495 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattccttcctttgtccctccagatgtattctcctccctttccttctctcatggttttgc 60
           |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 201 aattccttcctttgtccctccaaatgtattctcctccctttccttctctcatagttttgc 260

                                                                       
Query: 61  cccagaacattaacctgcctacattatgtacactagctcctagttcctgtcaggtatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagaacattaacctgcctacattatgtacactagctcctagttcctgtcaggtatgac 320

                                                                       
Query: 121 tgatgagaagacaggagaatgtatttgttcctttttatgttcttgagaaatgactgagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatgagaagacaggagaatgtatttgttcctttttatgttcttgagaaatgactgagtc 380

                                                                       
Query: 181 tgtgaaagactcattgtttttctcaaggtagtctgattttcacaagtttgttattgggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgaaagactcattgtttttctcaaggtagtctgattttcacaagtttgttattgggag 440

                                                                       
Query: 241 cttttattgttatttttcttgtactatactctctctaaattggggagcagttcagttcct 300
           ||||||  |  ||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 441 cttttaaggcaatttttcttgtactatactctctctaaattgtggagcatttcagttcct 500

                                                                       
Query: 301 acagtacccatcagtgttcccctgcttcttgccacatctttccaaatacataaccctaga 360
           ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 acaatacccatcagtgttcccctgcttcttgccacatcttttcaaatacataaccctaga 560

                                                                       
Query: 361 atatctctctctctctctccctctctctggaatatcatagaacctcactgactcttgata 420
           ||      ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 at------ctctctctctccctctctctggaatatcatagaacctcactgactcttgata 614

                                                                       
Query: 421 acgtgtagctgggcatgttcatatcagaatagttttctcacatggtacagacagtggttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 acgtgtagctgggcatgttcatatcagaatagttttctcacatggtacagacagtggttt 674

                          
Query: 481 ttaaaatatggttta 495
           |||||||||||||||
Sbjct: 675 ttaaaatatggttta 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)