BAC Information

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BAC

Clone NameMSMg01-065E15
Chromosome2 (Build37)
Map Location 64,195,936 - 64,196,448
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667257, Fign
Downstream geneLOC620544, LOC667291, Grb14, Cobll1, LOC383705, 9330158F14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065E15.T7 (MSMg01no065_e15.b1)MSMg01-065E15.TJ (MSMg01no065_e15.g1)
ACCAG290535AG290536
length678672
length of high quality
(start - end)
516 (44 - 559)514 (68 - 581)
definitionCHROMAT_FILE: MSMg01no065_e15.b1 PHD_FILE: MSMg01no065_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:45 2005CHROMAT_FILE: MSMg01no065_e15.g1 PHD_FILE: MSMg01no065_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAACACGCCTTTCTGAGTCTATATCCTTTGTTTGAGGGTGTGTTGCAG
CTACTCCAAGAGGTTAACTCCATTTCCCATCTCTTGAATCTGGATTGGCC
ATAGAACTTGCTTTGCCCTATGTGACAGAAGTGACAGCTTGCCAGAGTCA
GGGCTTCTTAATGACTCTCCTGAACGCTGGTCCAGCTGTCATGGGAATCG
GCCAGGATTAGCCTGCTGGAGGACAAGAGGCATGGTGAATAGTGATGATT
TATCCCAGTTGGAGCTGTTCTAGTCTTACCAGCCTCTAGTTGACCTGTGG
CTGATGGCAAATTGCTGAGCAATCCTAGCAACATCATTGAAAGCTGGCCC
AAAGCAGAAGGATCAGTCCCCATAGCCAAGTCTGTACTGCTCACTCCCAT
AACAGTAAGTTGAAAATTGGTCATTATTACAACCCACTCAATTGTGTGGA
GCCTTGTCACACAGCACTAGATAACTACTTGGATGCTGTAGATTGAGAAT
CCAGATTAAGATACATAAGGCTCAAGGATTAGCTGCAATATTACTGAGTG
AATGTGAAACCCCATTCTGGAAAGAATGATCTATCTTCCTTGCCTACCTT
TGCTTCTGTAGCTTTCCGCTGCCAATGC
ATGATAGGGTAGCCTGGCGCCGCCTTCCAACAACXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTTGAACTACAAGGTGAGAGATGCAGTAATTC
TTTGGGGGGGGGTACCAAAATGATGAAGGGGGGATACCTACTAATTCCAT
CTAACTAGGCAAACATATAACTCATAACCCCTTTGACAATGAGGCACCTT
GCTCTACTCAAACATTTTTGCTAGAAAGGAATTTGCCATAAGACAGGAGA
GATGTTTTCAGAATCTTGAGCTGTTCATATTCCTTTCAATAGCTGTAGTA
TCCATACAGAAACAGACATTTGTAAACATATGATAGAGTAGTCATTTATA
TTCACTTTTGGAAATTTCACTTGGAGTTAAGCTCTGTCTTTCAGTAAACT
TGGCTTCTCTTGGTTTAAAATTTTCCAAACATTAGGTGAATAGAGAGATG
CCCTGACACAATTTATGCCCTTAAGGAAGCTGAAAGGAAAAGGAGACAAT
TTGAACATAAATATACATGGGAAAGGGCAGATAGAAGATAAAATGTGAGG
GGTACAATGCCTTCCTAGAATATAAATGTGTGTTTTATGGCGCACATTAA
TGAAAAAGGTAGAACCAACGGGATATCTCCTTAGACATGTAGATATGAGC
ATCTCAGGATCCCTGCAAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_e15.g1 MSMg01no065_e15.g1 CHROMAT_FILE:
MSMg01no065_e15.g1 PHD_FILE: MSMg01no065_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:45 2005
         (514 letters)



>mm_chr2_64195736_64196648
          Length = 913

 Score =  963 bits (498), Expect = 0.0
 Identities = 510/514 (99%), Gaps = 1/514 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgaactacaaggtgagagatgcagtaattctttgggggggggtaccaaaatgatgaa 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 acttgaactacaaggtgagagatgcagtaattctttgggggggg-taccaaaatgatgaa 259

                                                                       
Query: 61  ggggggatacctactaattccatctaactaggcaaacatataactcataacccctttgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggggggatacctactaattccatctaactaggcaaacatataactcataacccctttgac 319

                                                                       
Query: 121 aatgaggcaccttgctctactcaaacatttttgctagaaaggaatttgccataagacagg 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 320 aatgaggcaccttgctctactcaaatatttttgctagaaaggaatttgccataagacagg 379

                                                                       
Query: 181 agagatgttttcagaatcttgagctgttcatattcctttcaatagctgtagtatccatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agagatgttttcagaatcttgagctgttcatattcctttcaatagctgtagtatccatac 439

                                                                       
Query: 241 agaaacagacatttgtaaacatatgatagagtagtcatttatattcacttttggaaattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agaaacagacatttgtaaacatatgatagagtagtcatttatattcacttttggaaattt 499

                                                                       
Query: 301 cacttggagttaagctctgtctttcagtaaacttggcttctcttggtttaaaattttcca 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 500 cacttggagttaagctctgtctttcagtaaacttggtttctcttggtttaaaattttcca 559

                                                                       
Query: 361 aacattaggtgaatagagagatgccctgacacaatttatgcccttaaggaagctgaaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aacattaggtgaatagagagatgccctgacacaatttatgcccttaaggaagctgaaagg 619

                                                                       
Query: 421 aaaaggagacaatttgaacataaatatacatgggaaagggcagatagaagataaaatgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaaaggagacaatttgaacataaatatacatgggaaagggcagatagaagataaaatgtg 679

                                             
Query: 481 aggggtacaatgccttcctagaatataaatgtgt 514
           |||| |||||||||||||||||||||||||||||
Sbjct: 680 agggctacaatgccttcctagaatataaatgtgt 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 913
Length adjustment: 10
Effective length of query: 504
Effective length of database: 903
Effective search space:   455112
Effective search space used:   455112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)