CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTAAGGTGCCTCTTCAAATTTTGTGCTGAACTTATAAATGCAAGTAAA
AACTAAAAAGGAGTTATGTCAAATCTTAAACTGTACAATTTTAAAATCTG
AACTAAAATGCTTGTTTAATTTACAGCTTTCATATAGGAGTACAAGATCC
ATATATTTTAACATGATTTCAATAACAATATAGCTTATACCAGAAGGAAA
CTTTTGATAATCCCACTGGTTTAGTTCAGCCCAAAGAAACAAAGCTATTT
GTAATTCTTACTTGAAAATATAGTAACACTGTAAGTTTTTATAAAGATTA
TGCTGATAGTTTGGTTACTTTACACAACAATATTCAAGTAAAATATAATA
AAATCAAATTAGATGACCATTTACTTATTCCGTGTATTCTGCTTCTATAC
TTGTTTGTTTCTTTATTCGGTTTATTCTGTTTTTATAGTTTATTTATTCT
GAATGCTTAAGAGTACATGGGGGCAGAGCCCTAAACCACATACTAGTCAG
CATTCAGTTGTGGGTAGTTTTTTAACTTCATTACCAAGTCATGTATGTTA
TCGATTAGGCTTCAAAGAATAATCACAATGCTGAAATACTAACGCCAATA
ATGGAAATAGATTATCTATGTGCATATTATCCAGCAACAGATAGAGATGT
CCATACCCTTCC

CATACAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCTTGGACTTTAGAGTAAGG
CTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
ATCCACAACCACAACATAAACAATCAAAACTATCTCAACACTATTCTATC
ACAAACTATTACACCAACTAAACTCTTTATATACTCCATTCATATACAAA
CAAACACATCACATAACATATCAACACATACACAATCCTCCTACTCTTAT
TCACCACCACTCCCCATCACACACACCTTTTTTTTTTTCACCCCACAACT
CCACCACACAACAAACATCCTCAAAACACCCCCCCCCACCCACCCACCCC
TCATCTACCAACTCCAACCATATAACATACACCCCCCACCTCAACTATCC
ATTTATTATTACCCCCCCACATAATTACACACTCCTCTCTCTACTTACAA
AATCCACCATTCCTAAAACACTAACCACATCATCACTAACCCACCCATAC
CTCTCTCTCCCTACACTACAAATTTCCCCCTACTTCACACCATATCTCTA
CTCATCATACTCTCCTTCTCACCCCTCTTCTCTATCTCATACATACATCA
CTCCCTTCACACCCCAACCTCCTTCCTCCCCCACCACATCACTCCTAACT
ACTTTTCCCACTTATCTACTTCATTCCTATTCTCCACCCCCACCCTACCA
TCACACCCCCATCACATACTACTTTACCTCCTCCCCTTATACTAACTCAT
CCTATATCAT

Query= MSMg01no066_b11.b1 MSMg01no066_b11.b1 CHROMAT_FILE:
MSMg01no066_b11.b1 PHD_FILE: MSMg01no066_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:46 2005
         (581 letters)



>mm_chr2_59942613_59943593
          Length = 981

 Score = 1071 bits (554), Expect = 0.0
 Identities = 572/578 (98%), Gaps = 2/578 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttaaggtgcctcttcaaattttgtgctgaacttataaatgcaagtaaaaacta 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaattctttaaggtgcct-ttcaaattttgtgctgaacttataaatgcaagtaaaaacta 723

                                                                       
Query: 65  aaaaggagttatgtcaaatcttaaactgtacaattttaaaatctgaactaaaatgcttgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 aaaaggagttatgtcaaatcttaaactgtacaattttaaaatctgaactaaaatgcttgt 663

                                                                       
Query: 125 ttaatttacagctttcatataggagtacaagatccatatattttaacatgatttcaataa 184
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 662 ttaatttacagctttcatataggagtacaagatccatatattttgacatgatttcaataa 603

                                                                       
Query: 185 caatatagcttataccagaaggaaacttttgataatcccactggtttagttcagcccaaa 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 602 caatatagcttataccagaaggaaacttttgataatcccactggtttagtccagcccaaa 543

                                                                       
Query: 245 gaaacaaagctatttgtaattcttacttgaaaatatagtaacactgtaagtttttataaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gaaacaaagctatttgtaattcttacttgaaaatatagtaacactgtaagtttttataaa 483

                                                                       
Query: 305 gat-tatgctgatagtttggttactttacacaacaatattcaagtaaaatataataaaat 363
           ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gatctatgcttatagtttggttactttacacaacaatattcaagtaaaatataataaaat 423

                                                                       
Query: 364 caaattagatgaccatttacttattccgtgtattctgcttctatacttgtttgtttcttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 caaattagatgaccatttacttattccgtgtattctgcttctatacttgtttgtttcttt 363

                                                                       
Query: 424 attcggtttattctgtttttatagtttatttattctgaatgcttaagagtacatgggggc 483
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 atttggtttattctgtttttatagtttatttattctgaatgcttaagagtacatgggggc 303

                                                                       
Query: 484 agagccctaaaccacatactagtcagcattcagttgtgggtagttttttaacttcattac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agagccctaaaccacatactagtcagcattcagttgtgggtagttttttaacttcattac 243

                                                 
Query: 544 caagtcatgtatgttatcgattaggcttcaaagaataa 581
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 caagtcatgtatgttatcgattaggcttcaaagaataa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)