Query= MSMg01no066_f22.b1 MSMg01no066_f22.b1 CHROMAT_FILE:
MSMg01no066_f22.b1 PHD_FILE: MSMg01no066_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:08 2005
(496 letters)
>mm_chr2_113732605_113733500
Length = 896
Score = 909 bits (470), Expect = 0.0
Identities = 488/494 (98%)
Strand = Plus / Plus
Query: 1 ttaagactggtgatgactgcaggagagtgggaacaaagaacaagggagggataatcccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaagactggtgatgactgcaggagagtgggaacaaagaacaagggagggataatcccag 260
Query: 61 actgtattttgagcctgtgggaagagaacacgcatccataggtcagggtcctacatgttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgtattttgagcctgtgggaagagaacacgcatccataggtcagggtcctacatgttc 320
Query: 121 tccggggatatccagggggccaaaattgcggcctcctcccaaaattggtccatgtcatga 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctggggatatccagggggccaaaattgcggcctcctcccaaaattggtccatgtcatga 380
Query: 181 gttttaacccttaaaccacgggtaaccagaagggttttgggtgccctatggggttccttg 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttttaacctttaaaccacgggtaaccagaagggttttgggtgccctatggggttccttg 440
Query: 241 atagtggagaggagggaacttacaccgacaagagcaaagaaaacaaatgatgaacagata 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 441 atagtggagaggagggaacttacaccgacaagagcaaagaaaacaaacgatgaacagtta 500
Query: 301 tgacagatgaggtgatgaaaatgttgtactaagcaagggactccttcatgtgtagctcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacagatgaggtgatgaaaatgttgtactaagcaagggactccttcatgtgtagctcaa 560
Query: 361 aggccctatgcctgcaccgtgttccgggaatgggaaaggagctcaggagacgatccctgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 aggccctatgcctgcaccgtgttccgggaatgggaaaggagctcaggagaccatccctgg 620
Query: 421 taccactgcctgggaaaccagtccctatgtcaggtacctggatgaatccaaatcaaaagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 taccactgcctgggaaaccagtccctatgtcaggtacctggatgaatccaaatcataagt 680
Query: 481 gaaaatgagtggac 494
||||||||||||||
Sbjct: 681 gaaaatgagtggac 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_f22.g1 MSMg01no066_f22.g1 CHROMAT_FILE:
MSMg01no066_f22.g1 PHD_FILE: MSMg01no066_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:08 2005
(529 letters)
>mm_chr2_113840996_113841924
Length = 929
Score = 948 bits (490), Expect = 0.0
Identities = 517/526 (98%), Gaps = 4/526 (0%)
Strand = Plus / Minus
Query: 6 gaattcaaaagag-atgtcg-aacacaaatgtgttagacaactcatgaatgatttctgaa 63
||||||||||||| | || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gaattcaaaagagtaagt-gaaacacaaatgtgttagacaactcatgaatgatttctgaa 671
Query: 64 aataaaaatagttaaaagttggatcttttctggattttgtagcctcaacttttggaatac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aataaaaatagttaaaagttggatcttttctggattttgtagcctcaacttttggaatac 611
Query: 124 catttgtgtttttttttttttcctatagatttcatttctatacctttcacatttctcttg 183
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 610 catttgtgttttttttttttt-ctatagatttcatttctatacctttcacatttctcttg 552
Query: 184 acaggcctttgacctttgacatacagaggtttgaaatgtaaggtaataaaattgaaattg 243
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 551 acaggcctttgacctttgacatacagaggtttgaaatgttaggtaataaaattgaaattg 492
Query: 244 atgaatattttaaggttatattttgtcccatggaagtttctcaaagtctataattttaat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 atgaatattttaaggttatattttgtcccatggaagtttctcaaagtctataattttaat 432
Query: 304 ttcctgaatgtattttcatacagtttcacagagaaactggggttgtgcttttttctattt 363
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 431 ttcctgaatgtattttcatacagtttcacacagaaactggggttgtgcttttttctattt 372
Query: 364 gttgcagggcaactgacaattacatttttaataagtaaaataaaaattgttgctttaaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gttgcagggcaactgacaattacatttttaataagtaaaataaaaattgttgctttaaaa 312
Query: 424 aatggtgctaagaataagttttcctaaccttaaaaaacaagctatttagcccatagatgc 483
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 311 aatggtgctaagaataagttttcataaccttaaaaaacaagctatttagcccatagatgt 252
Query: 484 cttacattctaggttctatgtagaagcgtttcgaggtatttataca 529
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cttacattctaggttctatgtagaagcgtttcgaggtatttataca 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
