BAC Information

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BAC

Clone NameMSMg01-066G19
Chromosome2 (Build37)
Map Location 170,334,093 - 170,334,413
singlet/doubletsinglet
Overlap genePfdn4
Upstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217, Silg111, LOC100043739, Bcas1, LOC228916, Cyp24a1
Downstream gene4930470P17Rik, Dok5, LOC668955, LOC100043743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066G19.T7 (MSMg01no066_g19.b1)MSMg01-066G19.TJ (MSMg01no066_g19.g1)
ACCAG291400AG291401
length736727
length of high quality
(start - end)
321 (75 - 395)242 (79 - 320)
definitionCHROMAT_FILE: MSMg01no066_g19.b1 PHD_FILE: MSMg01no066_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:12 2005CHROMAT_FILE: MSMg01no066_g19.g1 PHD_FILE: MSMg01no066_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAGGCATCCCAGCCCATTTCCCAATGTTTTTGACGTCTTT
TCATCTTATCCTGTTTGTATCTGACTCAAAGATGTTTGTAAGCTATTTTG
TCCTGACAGGGTTTGAAATCCTCGTACCTCCCCACTGCACGTAGGACCGG
TCAAACTAAAATTCCAAACCAAGGCGCGCCTCCCTCTCTGATCTTCGGGT
AGCACTTTTCCCTGGAGAGACACGGACAAACATCTGCTCACCCTAGAATG
GAAAGCGACGATGGAACCAAGTAAGGATGCCACACGAGTTCAATTTAGTG
AAACAATGAGTTTATCCCACCCGGGAGGGTGGGTGATGGGGTTACGTTCT
GTGATTGTGAGGTTCCACTTGTAGTAGTGACGAATTATTCTTCTTCTTCT
TTCTCTTTTTTTTTTGCTCCCCTTCTCCTTTTTGACTCTTGTATTTTGAT
ACCTATCATCTATCATTTGTTATTTCTCTATATTTATAATTCTATCTATA
TTTTGTATTTTTTATTCATTATATCTATTTTCTAAATTATATAATTTTAT
ACTAACTATGAAAACTATATTTATCTTGTATAACTCACATAATAGTTATA
AAGATTATCTATTATTTCTTTTTATATTTTTTTCTTTCTTCATCATCTCT
CTTTCATTATGATATATTTATACATCTTCTTCTTTA
NNCCCGATGCTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCAGTGGCAATGACAGACAA
ACGTATGGATTGCAATTTCTCGATTTGAGCCAGGAGAGTGCATTACTGCA
TTGCTGGTTTTAACTGTCACCTTGATGCAACAGAGAATCACCTGGGATCA
GAGTCTTAATGAGGAATTGTCTCGATGTAGATGCCCTTTGGGCATGTCTG
TGGGGGGTTATTTTGATGGTTGATTTATGAACGAAGACATGGCCCTATGT
GGGCGGCGCCATTCCCTACGCTGATTTCTGGACTGGTTCATACTATAGAA
CTCCCTTAAATCAGTAACTAGCAGACTGAGCTCAGCCCGGACTTCCTGAA
AATGATGGGCTGTAACTCATGACTGTGAACTACTATAAAACCTTTTCCTC
CTAAGTTGCTCCCCCCCTCCCGTCCCCAAAATATTTTAATGCAACATTAT
AAGTTTCACCTGTGTTTTTCTATTACATTATAAGTTAATCTATCTTTGCG
TAACTTGACAAAGTATAAAAATCGTTTTCTATATTCTATATATTTGACGC
CTGGTATTTTGTTTCCCTCTTTCTGGACTCTCTAGTTTGATTTTTTCTCT
CTCGCCTCTATCTCTCCTTTGTCCTTTCTCCTTTGCTGTCCTTTCCCATT
ATTATATTCCACTCCTTTATTTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_g19.b1 MSMg01no066_g19.b1 CHROMAT_FILE:
MSMg01no066_g19.b1 PHD_FILE: MSMg01no066_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:12 2005
         (321 letters)



>mm_chr2_170334035_170334755
          Length = 721

 Score =  582 bits (301), Expect = e-171
 Identities = 316/321 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttcccaatgtttttgacgtcttttcatcttatcctgtttgtatctgactcaaagatg 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 catttcccaatgttttggacgtcttttcatcttatcctgtttgtatctgactcaaagatg 320

                                                                       
Query: 61  tttgtaagctattttgtcctgacagggtttgaaatcctcgtacctccccactgcacgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttgtaagctattttgtcctgacagggtttgaaatcctcgtacctccccactgcacgtag 260

                                                                       
Query: 121 gaccggtcaaactaaaattccaaaccaaggcgcgcctccctctctgatcttcgggtagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gaccggtcaaactaaaattccaaaccaaggcgcgcctccctctctgatcttcgggtagca 200

                                                                       
Query: 181 cttttccctggagagacacggacaaacatctgctcaccctagaatggaaagcgacgatgg 240
           |||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 199 cttttccctggagagacatggacaaacatctgctcaccctagaaaggaaagcgatgatgg 140

                                                                       
Query: 241 aaccaagtaaggatgccacacgagttcaatttagtgaaacaatgagtttatcccacccgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 aaccaagtaaggatgccacacgagttcaatttagtgaaacaatgagtttatcccacccgg 80

                                
Query: 301 gagggtgggtgatggggttac 321
           ||||||||| |||||||||||
Sbjct: 79  gagggtgggggatggggttac 59


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)