BAC Information

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BAC

Clone NameMSMg01-066H16
Chromosome2 (Build37)
Map Location 50,763,850 - 50,858,445
singlet/doubletdoublet
Overlap geneLOC227885
Upstream gene2310010M24Rik, Lypd6, 2010311D03Rik, LOC666781
Downstream geneRnd3, LOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066H16.T7 (MSMg01no066_h16.b1)MSMg01-066H16.TJ (MSMg01no066_h16.g1)
ACCAG291442AG291443
length696643
length of high quality
(start - end)
324 (55 - 378)418 (34 - 451)
definitionCHROMAT_FILE: MSMg01no066_h16.b1 PHD_FILE: MSMg01no066_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:17 2005CHROMAT_FILE: MSMg01no066_h16.g1 PHD_FILE: MSMg01no066_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,763,850 - 50,764,171)(50,858,028 - 50,858,445)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXATTTTGTGTTAGCTCACTACTCCTGGACATGGGGTCTGCCCTGGAG
TGATTCTCCATTCAAGCAAACTTATTTCCCTTTATCAGAACCTATCAATT
GCAAATAGCTTTGTGGTTAGGTGTAGGACCCTGTGTTTCCTTCACCCTCC
CTAGGACCCCATCTGACTTGAGCATGTACAGGTCTTGTTTGGTAATTTTG
TCTTACTCTTTTTGTTTGCTTGTTTGAATTTTGGTTTTGTAGCTTGTTTT
TTATTTCTTTTCTTTTAAAGAAAGAATCTGGAATTGAATGCATAGGAAGG
TGGGAGGATCTGGTAGGAGTTGAGGATAGAGGATATTTATAATCCCACTT
TACATCTTAATACTATTATTACCACTTATTAACCGTAACTATATTCATCC
CCTCCCATCTCTATGCCTTTTCTCTATTGACTTCTCTTTTGCTTTGTTTT
GTTCTCCTAATTCTGTTCTAAATTTTATTTGCAATATCAGACTCTTTCCA
AATGCCTTATGTTCCCCTCCTTGTTTTAATTTTTTCTTCTCCTCCTCCTT
CTTTTTACTTCTTTCTTCATACCCCCCCTTCTTCTTGCTTATTTATCCTA
TTTTTTTTTTCACCTCTCTTCTTCTTTATATCCCCCTCCTCACCCC
TCAAAAGATCCGCGGAATTCAAGTGGGTGCCATTGAAAATTTATTTATAG
CTAAAATTTATTGTATTCATATGGAAAGTTCCCAAAGAATAAATGAAAAT
ATGATATTAGATAAGATATGGCCACATAGATAAAATAAAAGTCTTCGGCT
CCATTGCTATAATCCCACTTCTGAGGAATAGAATTTAGCTATCATTAAAT
AATATTAGTTCTTACAGGTCTCATAAACAAATATAATTTATTTATTCTAA
CATGCACTTTAAATTTAAATAGTATTTTAAAATAATAATTATAAACCTCT
GTTCTTTAGAGCTTGCTAAGAAAACAGGGGAATCCACATAAAACTTCTAT
CCCTGTCCTTTGCCCTTAGAGGCGTCGCTTGGCTTAATCCCTTGGCTATT
CATCCTAGCATTTACATTATCTGTTGGTGGAATGATTGTATTTCTGTCTT
ATCGCCTAGGTTTAAGTATTTATTTATGCATTCGCAATCCATGTGTGCTA
TGGTATACATATATGCACACACACATTTTGTCATTTATATTCATAGTGTG
TCTTCACATGGTATACATACTTTATGTTATTCATTTGCCTAGGTGGCATA
TGGAATATTAAGCTATGATTGCATTTTATAGGTCCAAATGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_h16.b1 MSMg01no066_h16.b1 CHROMAT_FILE:
MSMg01no066_h16.b1 PHD_FILE: MSMg01no066_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:17 2005
         (324 letters)



>mm_chr2_50763650_50764373
          Length = 724

 Score =  615 bits (318), Expect = e-180
 Identities = 321/322 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttgtgttagctcactactcctggacatggggtctgccctggagtgattctccattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttgtgttagctcactactcctggacatggggtctgccctggagtgattctccattca 260

                                                                       
Query: 61  agcaaacttatttccctttatcagaacctatcaattgcaaatagctttgtggttaggtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaaacttatttccctttatcagaacctatcaattgcaaatagctttgtggttaggtgt 320

                                                                       
Query: 121 aggaccctgtgtttccttcaccctccctaggaccccatctgacttgagcatgtacaggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaccctgtgtttccttcaccctccctaggaccccatctgacttgagcatgtacaggtc 380

                                                                       
Query: 181 ttgtttggtaattttgtcttactctttttgtttgcttgtttgaattttggttttgtagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtttggtaattttgtcttactctttttgtttgcttgtttgaattttggttttgtagct 440

                                                                       
Query: 241 tgttttttatttcttttcttttaaagaaagaatctggaattgaatgcataggaaggtggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttttttatttcttttcttttaaagaaagaatctggaattgaatgcataggaaggtggg 500

                                 
Query: 301 aggatctggtaggagttgagga 322
           ||||||||| ||||||||||||
Sbjct: 501 aggatctgggaggagttgagga 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no066_h16.g1 MSMg01no066_h16.g1 CHROMAT_FILE:
MSMg01no066_h16.g1 PHD_FILE: MSMg01no066_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:17 2005
         (418 letters)



>mm_chr2_50858022_50858839
          Length = 818

 Score =  793 bits (410), Expect = 0.0
 Identities = 416/418 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaaaatttatttatagctaaaatttattgtattcatatggaaagttcccaaagaataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgaaaatttatttatagctaaaatttattgtattcatatggaaagttcccaaagaataaa 365

                                                                       
Query: 61  tgaaaatatgatattagataagatatggccacatagataaaataaaagtcttcggctcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tgaaaatatgatattagataagatatggccacatagataaaataaaagtcttcggctcca 305

                                                                       
Query: 121 ttgctataatcccacttctgaggaatagaatttagctatcattaaataatattagttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttgctataatcccacttctgaggaatagaatttagctatcattaaataatattagttctt 245

                                                                       
Query: 181 acaggtctcataaacaaatataatttatttattctaacatgcactttaaatttaaatagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 acaggtctcataaacaaatataatttatttattctaacatgcactttaaatttaaatagt 185

                                                                       
Query: 241 attttaaaataataattataaacctctgttctttagagcttgctaagaaaacaggggaat 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 attttaaaataaaaattataaacctctgttctttagagcttgctaagaaaacaggggaat 125

                                                                       
Query: 301 ccacataaaacttctatccctgtcctttgcccttagaggcgtcgcttggcttaatccctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ccacataaaacttctatccctgtcctttgcccttagaggcgtcgcttggcttaatccctt 65

                                                                     
Query: 361 ggctattcatcctagcatttacattatctgttggtggaatgattgtatttctgtctta 418
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 64  ggctattcatcctagcatttacattatctgttggtggtatgattgtatttctgtctta 7


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)