Query= MSMg01no066_h17.b1 MSMg01no066_h17.b1 CHROMAT_FILE:
MSMg01no066_h17.b1 PHD_FILE: MSMg01no066_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:17 2005
(520 letters)
>mm_chr2_111825919_111826839
Length = 921
Score = 942 bits (487), Expect = 0.0
Identities = 508/517 (98%), Gaps = 6/517 (1%)
Strand = Plus / Plus
Query: 7 gaattcctgatcttttcc--gacttttatcatgaatgggtgttggattttgtcaaatgct 64
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcctgatct---ccaagacttttatcatgaatgggtgttggattttgtcaaatgct 264
Query: 65 ttctcagcatctaatgagatgatcacgtggtttttgtctttgagtttgtttatatagtgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctcagcatctaatgagatgatcacgtggtttttgtctttgagtttgtttatatagtgg 324
Query: 125 gttacgctgatggatttctgtatattaaaccatccctgcatccctggaatgaagcctact 184
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 gttacgctgatggatttctgtatattaaaccatcccggcatccctggaatgaagcctact 384
Query: 185 tggtcaggatggatgactgttttgatgtaaatgaagaaaatacctaataaaaaattggaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggtcaggatggatgactgttttgatgtaaatgaagaaaatacctaataaaaaattggaa 444
Query: 245 aaaaaaagataaaaaaaa-tcatttggaaaaaaaatacacttgaattggataaacgaagg 303
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 aaaaaaagataaaaaaaaatcatttggaaaaaaaatacacttgaattggataaaggaagg 504
Query: 304 gcaaataaaatattgggaagaaagagtaaacttatctgtgtgtacttggggacagggtga 363
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 505 gcaaataaaatattgggaagaaagagtaaacttatctgtgtgtacttggagacagggtga 564
Query: 364 ctgctgagttatgaagagcataaaggcaactaaggaaaatggtcagctcccagcccaggg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgctgagttatgaagagcataaaggcaactaaggaaaatggtcagctcccagcccaggg 624
Query: 424 aggaggaggagaatagaccgttatcttacagataaagaacagtctctgcaggtggccaga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggaggaggagaatagaccgttatcttacagataaagaacagtctctgcaggtggccaga 684
Query: 484 gaggcaattgagaggaatcagttatcacctaatatga 520
|||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaggcaattgagaggaatcagttatcacctaatatga 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 921
Length adjustment: 10
Effective length of query: 510
Effective length of database: 911
Effective search space: 464610
Effective search space used: 464610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_h17.g1 MSMg01no066_h17.g1 CHROMAT_FILE:
MSMg01no066_h17.g1 PHD_FILE: MSMg01no066_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:17 2005
(543 letters)
>mm_chr2_111967573_111968514
Length = 942
Score = 1011 bits (523), Expect = 0.0
Identities = 538/543 (99%), Gaps = 1/543 (0%)
Strand = Plus / Minus
Query: 1 attccttttgatatctttatcagttcttatggatattatttcatgtagatgaatacttgt 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 attccttttgatagctttatcagttcttatggatattatttcatgtagatgaatacttgt 641
Query: 61 gtatagccgacttttatatgtcttcttgccagatttcaacaaattacttgcacaatctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gtatagccgacttttatatgtcttcttgccagatttcaacaaattacttgcacaatctga 581
Query: 121 aaactatggaaagaaagtgcagccatctatatgtaaaaagataaatacatataatgtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 aaactatggaaagaaagtgcagccatctatatgtaaaaagataaatacatataatgtgaa 521
Query: 181 gcataagtaaggtatagaagagtctataccataggatgcttttcaatatagaaagatagg 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 520 gcataagtaaggtatagaagagtctataccataggatgtttttcaatatagaaagatagg 461
Query: 241 ggacatggattacaggctatgatcaaaacatatttgcctatatgaatcatgttttaatta 300
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 460 ggacatggattacaggctatgataaaaacatatttgcctatatgaatcatgttttaatt- 402
Query: 301 aaaaaatgagaatagattcaaatactctgtgtaattagaaattattttataaaccaataa 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 401 aaaaaatgagaatagattcaaatactctgtgtaattagaaattattttaaaaaccaataa 342
Query: 361 tagtacccaatgatctttgcttctattaggtattctgtgacttcaaatatttagtttcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tagtacccaatgatctttgcttctattaggtattctgtgacttcaaatatttagtttcat 282
Query: 421 ttgctcatgctaacattaggttttagcactcatatttaggcatagcttttgccctatcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttgctcatgctaacattaggttttagcactcatatttaggcatagcttttgccctatcta 222
Query: 481 aaattaagcaggtaataagtacatagacaagcatcaccaacaaaatacaagaaatgggag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 aaattaagcaggtaataagtacatagacaagcatcaccaacaaaatacaagaaatgggag 162
Query: 541 aga 543
|||
Sbjct: 161 aga 159
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 942
Length adjustment: 10
Effective length of query: 533
Effective length of database: 932
Effective search space: 496756
Effective search space used: 496756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
