BAC Information

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BAC

Clone NameMSMg01-066K24
Chromosome2 (Build37)
Map Location 89,726,503 - 89,727,051
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257
Downstream geneOlfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066K24.T7 (MSMg01no066_k24.b1)MSMg01-066K24.TJ (MSMg01no066_k24.g1)
ACCAG291601AG291602
length7131,571
length of high quality
(start - end)		554 (38 - 591)---
definitionCHROMAT_FILE: MSMg01no066_k24.b1 PHD_FILE: MSMg01no066_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:34 2005CHROMAT_FILE: MSMg01no066_k24.g1 PHD_FILE: MSMg01no066_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGAATCCGCGGAATTCTC
TTATCCTATGCAAAAGGCCTTCTCTAATCAGTTAAAGGCCTGCATATATA
AAAATGATGAATTACTAATTTCTCGATCAGCTTCATTTCCTTTGTTCTGA
GACATCAGCTATTTTTCCTGTCTTTGATCTGTAATAGTAGCTTTTCCTAC
CAGCATATACATTGAAACTATATTATTGGCATTTCTTCTTCTCATATCAG
TCTTGGACCATAACTATGCTACAAACTCTGCTAGGTCCCTAGTTATTTGT
AGACCTTGGAAATTTTCATCTTCCATAACTATATGAAAGAAATATGGCTC
CAGAATACAGTACTTACCTCTCATACACAAGGCCCTGAGTTCAATCCATA
ATACTCTAAAGAGAGTTACATATTCACATGATATATTATTATATTATGAT
TATGTTATAGTAAATATTCATTGTGGAGGATTTTTAATCTAGCAACATGA
CTGCTCTGGCAAGGGATCACATCCAAAGACCTTCCAGATCTGTGTGATCT
GACTGGAATATAGACATGTCTTTAATTCCAGGAGACACAGACAAGCAGAT
CTCTGAGTTCAAAGCCAGCCTGGCATATAGCAAGTTTCAGGTACAGACAC
GCTTAGGTCTAAGTATGGTAGCGGTAGCACATGCCTTTAAGCCCAGGACT
CAGAATATTATGG

TACCATTTTTTTTCTTCTCCTCTTCCCTCTGTTCTCTTTTTGCTTCGTTG
CGGCTTCCGTCCTCGCGCGGATCTCTTGGTCGTGCTTCTTCTTCCTGTGT
ATTGTTGTCTATTTTCGTCTTGTGATATATTTATCTATCTCTATCACTCA
TTGTGCTTTGTCTATTCATCACTGCTTTTGAGTCTGATGGTCCGGCCGCG
CACGCGGTTCTTCTATTCCATNATATGTATTTATAGTCGACACCGNATGG
TTGACGCTCGGCGGCGTGTCTTTTATGTGTAACCGCGTGAGTATCTTATA
TGCGGCGTCTTCTATATTATTACGTGACATACGGATGCGGCGCGGCGTGG
TNCGGCCGCGTATGCTGGACGGGCGAGCGCGGCTTCATTATCGCCCGCAC
CCAGAGAACCCCGCTCGACATTATATATCAGCGTACATATTATATACGTA
TCATATATATATCACAAAATAGTGTTATGACCACCACTANATATGCCGCA
CTATATGTAATCGCCGCCGCGCATAATAAACACATATCTTCTACCACCGC
GCATTATATACCGGCTATATCTCCTCGCATATTCAATACCGTCCGCGTCA
ACTAAGCCTCGATCACTAGACGATCACTCCAACTCGGCGCATCATCACGG
CATATTGACCTGAATATCCGGCGCGATAATATGCCGGTGCATCGAATAAG
AGCGGTGAATCGGACACTCAATATATCGCGATAATACGCTATTACTCGGT
ATAATATTCGAATGTTCGCACCTCCTACATGCACTTATAAATCCGTGCCC
GACTACAAGCGTCGAATTACCGAATAATACCTTATTATAATCGGCCGGCG
AGTGAGAAATAACGCCGTCTCAATTGACCACGCGGTATATCGTGCACGCT
CTATAACGCTATCACGTGTCAGCTTCATATACCGTACAACATGTATCTGA
TAATCGCCCGTGATGACCAACTTGATCTCTCATAATTACCGCTACACGCT
AGTCGCATACATATATATCCGGATATGCCGCCATCATATACTCGACTGCT
ATAATACAACGCGTTCGACCCTCATATATTCGATGTCAAATATATATGAT
CCCGTCATCAATATCTATTATGTAATCTTCATATCGGCGACGAGATAAAT
CCCGCGCGTGTATATAGTGCACTCATTAATGTACATCTATACTATGATGC
GCGTATTCACAATCATACTACATCGCGGCCGATGATAGTATTATCGCCGC
GTCGTGAGCGCAGCACATATACACTGCGTGTTGGCATACACTATAATAAA
NTGAATATNACTGACTCTATACGTCACNCTATAAGACTATATATATAGCA
CACACGTATATATAGCATGACGCGCTTATAGTCCGCACACAGTGAGCATA
ATAAATAGTAACATCTGCGCACATATGAAAATGNTATCTATTACACAACA
TCACATGACCTCTCAATGTATATATNTACTATTATAAATACTAACACGCG
GTCTACTATATNTACGTAATCAGATTGCGGGTGCACGCACTATACCATCT
CCATATGTATACTCTCCGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_k24.b1 MSMg01no066_k24.b1 CHROMAT_FILE:
MSMg01no066_k24.b1 PHD_FILE: MSMg01no066_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:34 2005
         (554 letters)



>mm_chr2_89726298_89727251
          Length = 954

 Score = 1046 bits (541), Expect = 0.0
 Identities = 547/549 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctcttatcctatgcaaaaggccttctctaatcagttaaaggcctgcatatataaa 65
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctcttatcctatggaaaaggccttctctaatcagttaaaggcctgcatatataaa 265

                                                                       
Query: 66  aatgatgaattactaatttctcgatcagcttcatttcctttgttctgagacatcagctat 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatgatgaattactaatttctcgatcagcttcatttcctttgttctgagacatcagctat 325

                                                                       
Query: 126 ttttcctgtctttgatctgtaatagtagcttttcctaccagcatatacattgaaactata 185
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttttcctgtctttgatctgtaacagtagcttttcctaccagcatatacattgaaactata 385

                                                                       
Query: 186 ttattggcatttcttcttctcatatcagtcttggaccataactatgctacaaactctgct 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttattggcatttcttcttctcatatcagtcttggaccataactatgctacaaactctgct 445

                                                                       
Query: 246 aggtccctagttatttgtagaccttggaaattttcatcttccataactatatgaaagaaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aggtccctagttatttgtagaccttggaaattttcatcttccataactatatgaaagaaa 505

                                                                       
Query: 306 tatggctccagaatacagtacttacctctcatacacaaggccctgagttcaatccataat 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tatggctccagaatacagtacttacctctcatacacaaggccctgagttcaatccataat 565

                                                                       
Query: 366 actctaaagagagttacatattcacatgatatattattatattatgattatgttatagta 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 actctaaagagagttacatattcacatgatatattattatattatgattatgttatagta 625

                                                                       
Query: 426 aatattcattgtggaggatttttaatctagcaacatgactgctctggcaagggatcacat 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aatattcattgtggaggatttttaatctagcaacatgactgctctggcaagggatcacat 685

                                                                       
Query: 486 ccaaagaccttccagatctgtgtgatctgactggaatatagacatgtctttaattccagg 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ccaaagaccttccagatctgtgtgatctgactggaatatagacatgtctttaattccagg 745

                    
Query: 546 agacacaga 554
           |||||||||
Sbjct: 746 agacacaga 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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