BAC Information

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BAC

Clone NameMSMg01-066M03
Chromosome2 (Build37)
Map Location 30,689,239 - 30,689,426
singlet/doubletsinglet
Overlap genenone
Upstream geneUrm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6
Downstream genePrrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066M03.T7 (MSMg01no066_m03.b1)MSMg01-066M03.TJ (MSMg01no066_m03.g1)
ACCAG291655AG291656
length760793
length of high quality
(start - end)
203 (46 - 248)---
definitionCHROMAT_FILE: MSMg01no066_m03.b1 PHD_FILE: MSMg01no066_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:39 2005CHROMAT_FILE: MSMg01no066_m03.g1 PHD_FILE: MSMg01no066_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTTCCAGCACAGACATGGACTGGGGGAAAGAAGGAAACAGCA
GGCCACATATTGATTCCAGATGTGGCCCTCTCCAGGCTCTCTCCAGCAAT
TTAATTAAGTTCCCCAGACAGCCAGGAGAGGTTCTTAGTGATCAGATTTC
CTGGCTCCCTCCTCCAGCAGCCATGGGCCCACTGTCTCCCTGACGGATGG
TGACGGGTCCTTCCTGCCCTGAGTCAGTTTCGCCTACAGGGTAGGGCTCT
GATATCTTGTTCTTCTCTTGTTTTTGTGTCCTTGGTCCCATTATCAGCCC
ATACTTCCTTCTCCTTAACTCCAGATATTTTGTTTTTCTCGCTGTTTTTT
GTCTTTCTTGTTTTTTTTTCTGCTGACTTTGGTACAGTGCGGCGGGAGGG
TTTTCTTTTTGTTTGGTGCTTCTATGCTTTCCGCCCCCTGTGTTCTGTGT
GAATTTTATAGTGGAGTTGCGGCATTGTGTTTCTTCAGTTATACGGGTGT
ATCTGCTGCGTGCTGATACTCCAAAATTTAAAAATCTGTTTAATATGTTA
GTTATCTTTTTTTTTCTCTTTGTTTTTCTCTCATCTATTCGAGTCTGGTT
TTTGATATCATAATTATCTTTTCGTTTTATTCCTTGTCTCCCTCGTTGTC
TGTCGTCTCCCTCTTGGCATGCCCTTTTCCCGGGCCCACTTCCTCACCCT
GTTTGTGGTT
CGATGCAGTGCGAGGCCTGGCGGTCGCCTGGTTTTCCAAAATAGGTGACC
TATTGAAGGATTTTCCGAATTCTTACTGCCTGGCTGCCTAGCCTGGGGCG
CCACACGTTCTGGAAGGGCTGAAGATTTTCTGGTCTCTATCTGGCTTATT
ATTGAGAGCATTCTGCGTCTCGCGTGCTGCTTCCTCCAGCGCCCCCAGTA
ACCTGCTCTTCCCGATCACGTATTCTTCTCGTTCCTCTACCATTCACCAT
TGTCGTCTATTTTCTTCTTTAAGTATGAAACCTCCGGAACATGAGCGCTC
TCTACCTCTCGTATGTCTCGTATATTATTGTACCCTGAGAATTGACGGGA
CTCTTGTTCATGTCCTCTTAGCTTTACCGCACAAGTATCTAATGTTAAAT
TTTCATTCTTACATATACATAATATTTATTATTTATTATAATTCATTCTA
ATATTTTTTTATATCTATATCACAAATATTACTACATGCAATATAAATTT
CACATTATATTAAACATACATTCTAATTTATATCTATCTACACAAAATCA
ACGTAAAACTACTAAAATAATACAATTTTAATAACTATATAATTAACTTT
ATAGATTCGCATCTATAGTCAAATTACAATATTTGTACCATATACGAAAT
ACATTATTTTTTTTTATATACATTTCAAATCTATCCATTCATACAACACT
ATTTTCACATTATCCTTTTTCATATACATATAGAATATAACACGATCCAC
AGCACACTCTAATTAAATAACTACAATACCTTTCTAGACTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_m03.b1 MSMg01no066_m03.b1 CHROMAT_FILE:
MSMg01no066_m03.b1 PHD_FILE: MSMg01no066_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:39 2005
         (203 letters)



>mm_chr2_30688946_30689548
          Length = 603

 Score =  331 bits (171), Expect = 2e-95
 Identities = 187/199 (93%), Gaps = 11/199 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgttccagcacagacatggactgggggaaagaaggaaacagcaggccacata 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaattctctgttccagcagagacatggactgggggaaagaaggaaacagcaggccacata 422

                                                                       
Query: 65  ttgattccagatgtggccctctccaggctctctccagcaatttaattaagttccccagac 124
           ||||||||||||||||||           |||||||||||||||||||||||||||||||
Sbjct: 421 ttgattccagatgtggcc-----------ctctccagcaatttaattaagttccccagac 373

                                                                       
Query: 125 agccaggagaggttcttagtgatcagatttcctggctccctcctccagcagccatgggcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agccaggagaggttcttagtgatcagatttcctggctccctcctccagcagccatgggcc 313

                              
Query: 185 cactgtctccctgacggat 203
           |||||||||||||||||||
Sbjct: 312 cactgtctccctgacggat 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)