BAC Information

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BAC

Clone NameMSMg01-066P05
Chromosome2 (Build37)
Map Location 19,091,572 - 19,092,018
singlet/doubletsinglet
Overlap genenone
Upstream geneMllt10, LOC641254, Dnajc1, LOC100041388, LOC623325, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik, LOC667521
Downstream geneArmc3, Msrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066P05.T7 (MSMg01no066_p05.b1)MSMg01-066P05.TJ (MSMg01no066_p05.g1)
ACCAG291803AG291804
length707716
length of high quality
(start - end)		650 (46 - 695)390 (74 - 463)
definitionCHROMAT_FILE: MSMg01no066_p05.b1 PHD_FILE: MSMg01no066_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:55 2005CHROMAT_FILE: MSMg01no066_p05.g1 PHD_FILE: MSMg01no066_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCTGTGATTATGGTTTAGTCTTTGTAGTTTATAAAATTATACC
TATTACTGTACTGAATGATCACTGGCCTTCACCTAGACTGGTTTACATTA
AAATATGTTCTCAATTCAAATGACAGATTTCTCAATTGGTTTCACTTTGA
TTTTTAAACTCTTTTTGTGATGTGAGAAAGAAAAAGTCACAGGTTCAATC
CTCCAGGAAGCAGTTGAGTAGACAGAATTAAAAACAGAAAAATATTTATC
ATGAACCAAGTTATGGAATTGGCCTAGGTGTCTACCAAAAAATAATCAGT
GAATTTTAAAAAGCAGTAAACATACACAACAGATCTTTATTCTGTCATAA
AGAATAAAATTATGATTTTTATAGGGAAATCGATATACCTGGTGCTCACC
GCCAAAAGTGAGTTAGATGCAGAAAGACAAACACTGGTTGTTTTCTCTCA
TACTTGGAATTTGACTTCTCAAAATAAAGCATGAGAGTAGAAGGGAGACT
GGTTGGAAATAAGAAGGAGGCAGCTAGAGGGCATGCTCAAAGATCCAGAC
TTAAAAGAAGGTCATAATGAAATCTATTTATTTTGTAAATGAATAAATAT
GTGCTAATAAAATAATTTAAATTAATTTTTCTTATGAAAGAAATGTTATA
ACATGAA

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGATCTCTCTAATACTTTTAACATGA
ATGGGTGTTGTATTTTGTCAAAGGCCTTTTCCACATCCAATGAGATGATC
ATGTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCGGGTTCATATAGTGGA
TTACATTGGTGGATTTCCTTTTATTGAACCATCCCTGCATCCCTGGGATG
AAGCCTACTTGATCATGGTGGATGATCATTTTGATGTGTTCTTGGATTGG
GTTTGCGAGAATTTTATTAAGTATTTTTGCATTGATATTCATAAGGAAAA
TTGGTCTGTAGTTCTCTTTCTTTGTTGGGTCTTTTTATGGTTTAACTGTG
TCTTCGTAAAAAGAATTGGGCAGGGTTACTTCTGTTTCTATTTTATGGAA
TAGTTTGAGGAGTATTGGTATTAGATCTTTTTTCTGAATACCGCCTTTAC
CCTCCTCTATTTCTCCAATTCATTATTAGCTTTTCCTCGTTTCTATTTCT
ACTCTTTTCTTTCCCCTTTTTTTCTGTTTCGTTATCACCGCTTATTACTC
CTCCCTTTTCTACCTTTTGATTGGTAGTTTTTTTCTTTTTTCCTTTCCAT
TCTCTCTCCTTCCTTTTTTCTTTCCTTTTTTTTTTTTCCTCCTTCTGCTT
TTCCTTCTTTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_p05.b1 MSMg01no066_p05.b1 CHROMAT_FILE:
MSMg01no066_p05.b1 PHD_FILE: MSMg01no066_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:55 2005
         (650 letters)



>mm_chr2_19091572_19092621
          Length = 1050

 Score =  797 bits (412), Expect = 0.0
 Identities = 439/448 (97%), Gaps = 1/448 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttctgtgattatggtttagtctttgtagtttataaaattatacctattactgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gaattccttctgtgattatggtttagtctttgtagtttataaaattatacctattactgt 388

                                                                       
Query: 65  actgaatgatcactggccttcacctagactggtttacattaaaatatgttctcaattcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 actgaatgatcactggccttcacctagactggtttacattaaaatatgttctcaattcaa 328

                                                                       
Query: 125 atgacagatttctcaattggtttcactttgatttttaaactctttttgtgatgtgagaaa 184
           ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 327 atgacagatttctcaattgatttcactttgatttttaaattctttttgtgatgtgagaaa 268

                                                                       
Query: 185 gaaaaagtcacaggttcaatcctccaggaagcagttgagtagacagaattaaaaacagaa 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 267 gaaaaagtcacaggttcaatcctccaggaagcagttgggtagacagaattaaaaacagaa 208

                                                                       
Query: 245 aaatatttatcatgaaccaagttatggaattggcctaggtgtctaccaaaaaataatcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 207 aaatatttatcatgaaccaagttatggaattggcctaggtgtctacc-aaaaataatgag 149

                                                                       
Query: 305 tgaattttaaaaagcagtaaacatacacaacagatctttattctgtcataaagaataaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 tgaattttaaaaagcagtaaacatacacaacagatctttattctgtcataaagaataaaa 89

                                                                       
Query: 365 ttatgatttttatagggaaatcgatatacctggtgctcaccgccaaaagtgagttagatg 424
           |||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 88  ttatgatttttatagggaaatcgatatacctggtgcccatcaccaaaagtgagttagatg 29

                                       
Query: 425 cagaaagacaaacactggttgttttctc 452
           |||||||||||||||||| |||||||||
Sbjct: 28  cagaaagacaaacactggatgttttctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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