BAC Information

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BAC

Clone NameMSMg01-067A16
Chromosome2 (Build37)
Map Location 93,446,142 - 93,559,326
singlet/doubletdoublet
Overlap geneAlx4, Ext2
Upstream geneChst1, Syt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82
Downstream gene2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067A16.T7 (MSMg01no067_a16.b1)MSMg01-067A16.TJ (MSMg01no067_a16.g1)
ACCAG291873AG291874
length695702
length of high quality
(start - end)
309 (48 - 356)281 (74 - 354)
definitionCHROMAT_FILE: MSMg01no067_a16.b1 PHD_FILE: MSMg01no067_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:02 2005CHROMAT_FILE: MSMg01no067_a16.g1 PHD_FILE: MSMg01no067_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,559,022 - 93,559,326)(93,446,142 - 93,446,422)
sequence
GTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATCAGAGGCGCTATGACAATGACATTTATATTTAAACAAAATT
AGTAAACTACATCCAGCTCTATCTGCACCCAGAGACAAAAGGACAGAGGA
TACAATCTGCAGTTCTGAGTAGTTGGTTTCTCTCCTCTCACTATAATGGC
TACAGAAGGAAACAGCCCGCTGAAAATTAGATTCCATTGTCAGGACCTTC
AAAAGTGAAGCAAAAATGCAAAAGATAAATTTGATCTCCCTATACTGGCG
CTCATCTACCCAGAGCTTTGATCTGTCCAAGAAGGTCTGGGAGCAAAGGA
GTGCCAAGTGTTGTCTTGTGCGCCCTGCTGCCTCCTGATTTGGAAGTAAC
TGCTTACCTTCCTAGGAATCCCAAAATTACTCTGGAGTCATGTCCAGCCA
AGCTTGTTGGAGATCCAGGAGACACTATAAAAAGACTTTTCTTTATGGTA
TATCCTACTGGTTTCTGTGGGCAGGCTCAGTCTTTGAGCTACCCAGGTTA
ATTTTCAGCTTTTATATATTCCATACAAACGGATGCATCTATGAATGATT
TGAAGTATAGTTCATTTCTTGTCATCTGAAAGTGACAGTCACCATCTTTA
ATATGGACTGCTGTGCTGACCCAAGTATACTCTGTTTCATGTTCN
CATTGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTGAGTGGACTGAGTCATTCTCCCCT
AAGTTCTGTCCCCAGGAATTTTCCAGGAGACTCCAGTACCGTATCTCTGC
AGGACCTCCTTCAGTCAGTAACGTAAAGTAGTCAGTGAGCACAGACTTCT
AGAAAGACTCAAAAGGAGGTTAGCTTCCTGCCTGGGGACTTTCCGGAGAC
TGGAGCACCTGACGTGATTTTTCTGTGTGTGGACAGGAAGTCATGTCTTC
AGTGAATAAAATAATTCCTGAATCACCTGATGATGGAGGGAAACTGAGTG
ATCTCTGGAGCCTCTGGCCGCGTGGGGGGCATGCTGGGATGCGTAGGTGT
TTATAGGCTGCATGATAAAAGGCCATTACTGGTTTTCCTCGTGGCTCATC
ATACTCTTTGATCTGATATATGACAGTGTGTGTCTGTGTGTGTGTATTTG
CTGATTTTTCCCTATTTTTTCTTTCCCCTTTATTCCTATTTACTTTTCTT
TTTCTCTACTTTTTTTCCTATTCTTTACTTACATAATCCCACATCACTCC
TAACCTCCCTCTTATCCTATATCCCCCGACCCTTTTCTATTCTTTTTTTC
TGTTATTCTTTCCCTCCTCTTTCTTCTCCCTTTATTTTTTTCCTCTTTCC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_a16.b1 MSMg01no067_a16.b1 CHROMAT_FILE:
MSMg01no067_a16.b1 PHD_FILE: MSMg01no067_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:02 2005
         (309 letters)



>mm_chr2_93558818_93559526
          Length = 709

 Score =  567 bits (293), Expect = e-166
 Identities = 302/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcagaggcgctatgacaatgacatttatatttaaacaaaattagtaaactaca 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaattcatcagaggtgctatgacaatgacatttatatttaaacaaaattagtaaactaca 450

                                                                       
Query: 65  tccagctctatctgcacccagagacaaaaggacagaggatacaatctgcagttctgagta 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tccagctctatgtgcacccagagacaaaaggacagaggatacaatctgcagttctgagta 390

                                                                       
Query: 125 gttggtttctctcctctcactataatggctacagaaggaaacagcccgctgaaaattaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gttggtttctctcctctcactataatggctacagaaggaaacagcccgctgaaaattaga 330

                                                                       
Query: 185 ttccattgtcaggaccttcaaaagtgaagcaaaaatgcaaaagataaatttgatctccct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttccattgtcaggaccttcaaaagtgaagcaaaaatgcaaaagataaatttgatctccct 270

                                                                       
Query: 245 atactggcgctcatctacccagagctttgatctgtccaagaaggtctgggagcaaaggag 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 269 atactggcgctcatctacccagagctttgagctgtccaagaaggtctgggagcaaaggag 210

                
Query: 305 tgcca 309
           |||||
Sbjct: 209 tgcca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no067_a16.g1 MSMg01no067_a16.g1 CHROMAT_FILE:
MSMg01no067_a16.g1 PHD_FILE: MSMg01no067_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:02 2005
         (281 letters)



>mm_chr2_93445942_93446622
          Length = 681

 Score =  528 bits (273), Expect = e-154
 Identities = 279/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgagtggactgagtcattctcccctaagttctgtccccaggaattttccaggagactc 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 attgagtggactgagtcattctcccctaagttctgtcccaaggaattttccaggagactc 260

                                                                       
Query: 61  cagtaccgtatctctgcaggacctccttcagtcagtaacgtaaagtagtcagtgagcaca 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtgccgtatctctgcaggacctccttcagtcagtaacgtaaagtagtcagtgagcaca 320

                                                                       
Query: 121 gacttctagaaagactcaaaaggaggttagcttcctgcctggggactttccggagactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacttctagaaagactcaaaaggaggttagcttcctgcctggggactttccggagactgg 380

                                                                       
Query: 181 agcacctgacgtgatttttctgtgtgtggacaggaagtcatgtcttcagtgaataaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcacctgacgtgatttttctgtgtgtggacaggaagtcatgtcttcagtgaataaaata 440

                                                    
Query: 241 attcctgaatcacctgatgatggagggaaactgagtgatct 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcctgaatcacctgatgatggagggaaactgagtgatct 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)