BAC Information

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BAC

Clone NameMSMg01-067B22
Chromosome2 (Build37)
Map Location 39,952,295 - 39,952,579
singlet/doubletsinglet
Overlap genenone
Upstream geneA930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
Downstream geneLOC100042604, Magmas-ps, LOC666531, Lrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067B22.T7 (MSMg01no067_b22.b1)MSMg01-067B22.TJ (MSMg01no067_b22.g1)
ACCAG291933AG291934
length678684
length of high quality
(start - end)
317 (38 - 354)288 (73 - 360)
definitionCHROMAT_FILE: MSMg01no067_b22.b1 PHD_FILE: MSMg01no067_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:08 2005CHROMAT_FILE: MSMg01no067_b22.g1 PHD_FILE: MSMg01no067_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
GTCAGTTCATAGACCAAACCTTCAACAAGATCATACAAAATACTTTCCTA
AACTCAAAAAAGGGCATATCCTTATAGATAACAATCAGCATACATAAGAC
CAAATAGCTATGATCAGGAACAAAGACTCCCAACAGCATATGAGATCAAA
TATAAATATACCTACCAAAAAAGAATATTAAAAGCTGCCAGAGAACAAAG
CACAAGTCAAATATGGAAAAACAAATCCATCAGTATAAAAACTGATTTCT
CAGAGGAAAATTTGAAATCATATTAAACAATTCAGTTTGGTGAACCACTT
CATTTTTTTATATCTACACCCCCCCTCCCGCTGATAACTAATCTGAAAAT
ATATGTTTAAGTAAAAAACTCACATACTTGAAGACATGCATTTTATGAAA
ATCCTTTAAAGCAGACACGCATGAATAACTTCATCTTTTCAAAGACTGTA
CTATAAGTGCAATGTAACATTTTAAAATATAATCTTGAATTGCTTCCTAA
TTTGAGTATCTGCATAGACTGGGATAATACTCTTCTCTATTAAAGCTCTG
ATTCTCGATAATAAAGGCAGAAAAAAGCGGATAGGGTTTGATATCCTAAA
GATAGGGGAAGATGCGGCTAAACTAATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGGCCACCGTGCAGAGATTGTCTGAA
ATAAAGTCTTTCTTATGATGCTGTAAGTACAGTTGATAAATTTTTCTCTT
CATGTAGAGTAATAGACCAAGTCTATGTGACCAGAATTATTTCCACTTTC
TCTTATGTTTCACTGATAATTCTGCAGGGGTACCATTATGATGGTAATAA
TGTTCTTTTTAGTGTTTTCTGTTGCTTTGTGACAGAGTTATTTATTTTTA
ATACAATAACTCACCAACTCTTGTAGAAATAATTCTGTCATACTTTTTAT
AATTAGGTTATTTATTACTAACCCCCCACCACCGTTCTCAAACTTATCTA
GCTAGGAAGTGGAAGAATTACAGTTTAAATCCATAATGTGCCTCGTACAT
TCTTGATGTGTTTTATACAGATCACCTTTATTTACCCTCTAAGATAAAAT
TATCCATCTAAATTTTATTTTAAAATACTTTAAAACATTAGGGTAGGCAT
ACAAAGAAAGGTAAGCAATTAAGTATAACTCATTACAAAATAATGGCCAT
TGTCAAAGAATAACATGTACTACTCTCCATCCTTCAATGACTTTGGTGAT
GGTTAGTATTAACTGTCAAATAACATGTGGAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_b22.g1 MSMg01no067_b22.g1 CHROMAT_FILE:
MSMg01no067_b22.g1 PHD_FILE: MSMg01no067_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:08 2005
         (288 letters)



>mm_chr2_39952095_39952782
          Length = 688

 Score =  513 bits (265), Expect = e-150
 Identities = 280/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggccaccgtgcagagattgtctgaaataaagtctttcttatgatgctgtaagtacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggccaccgtgcagagattgtctgaaataaagtctttcttatgatgctgtaagtacag 260

                                                                       
Query: 61  ttgataaatttttctcttcatgtagagtaatagaccaagtctatgtgaccagaattattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgataaatttttctcttcatgtagagtaatagaccaagtctatgtgaccagaattattt 320

                                                                       
Query: 121 ccactttctcttatgtttcactgataattctgcaggggtaccattatgatggtaataatg 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 ccactttctcttatgtttcactgataattctgtaggggtaccattatgatggtaataatg 380

                                                                       
Query: 181 ttctttttagtgttttctgttgctttgtgacagagttatttatttttaatacaataactc 240
           ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ttctttttagtgttttctgctgctttgtgacagagttatttatttttaatgcaataactc 440

                                                        
Query: 241 accaactcttgtagaaataattctgtcatactttttataattagg 285
           |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 441 accaacacatgtagaaataattctgtcatactttttataattagg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)