BAC Information

Click to search

BAC

Clone NameMSMg01-067F02
Chromosome2 (Build37)
Map Location 92,007,978 - 92,008,220
singlet/doubletsinglet
Overlap genenone
Upstream geneMadd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1
Downstream genePhf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1, Syt13, LOC100042784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067F02.T7 (MSMg01no067_f02.b1)MSMg01-067F02.TJ (MSMg01no067_f02.g1)
ACCAG292082AG292083
length656711
length of high quality
(start - end)
---247 (75 - 321)
definitionCHROMAT_FILE: MSMg01no067_f02.b1 PHD_FILE: MSMg01no067_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:23 2005CHROMAT_FILE: MSMg01no067_f02.g1 PHD_FILE: MSMg01no067_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTACACACTCCTAAGATGCGGACCGGGAANCGCACNTTTTCCTN
CACGAGGCAGAAGAAAGAGCCCNNGCACGGGCCCCCCGTTTGACCCAAGA
AAAAAGCNNNNGAAAAACCCAGCCCGAGNNGAAAGAGAGCCCGGGAGAAA
CCGGGAGCAGAAAGCGGGAACAGGACGCAGAACAGGCAGCGAAGAGGACA
CGGCGATGGGCCCAAGCGGCCGACAAACCACAGCCCAGCCGAAAGAGAGA
GCCCCCGCGCCAACATTTTTTTTTTAGCCAACGCCCACACAAACAGGAAG
CAAACTTTTTTTTTTCCCCCCCCCCCCCCGCCCAAAAGCAGCACCTGTTT
ACTGTTTTACACATTGAAAAAAAAAAAAAAAGTTAGTGGGCTGGTGCCTC
TCCTCCCTCTTAATTGGTTTTTGGTATTATTTGAACATGCATCCTTCTGC
TCATGTCCCCTGTGTTTGCCTTTTTCCACGTCTCTTGGTTATTGCCCTTG
TTTTCCACCTTGATGCATTACCTGTCAAATTTTCACCCCATTTTTTCGCC
ATCTCTAATTTATTCCTCTTAATTTTATTCTGCTCTGATCTTTTTCTTCT
CTTTCTTACCTCTCTTTATCCCCTTCCTTTGTTACTTTCCTATATTATCT
TCCCTT
AGCGATGCTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCTAAGGCCTCTGATGGGCTAGCAC
CAGGCTGAGAAGGACCAGGAAAGTCTTTGAGAATGGATGACTCCTGAGGC
GAGGGACTCCAGAGAAAAGCAACTCTCTCCCTCTGTGACATAAAGAGAAG
TCAGGGTCTACCCTATAGACCAGTGGTTCTCAGCCTACCTAATTCTGCAA
CTCTTGGTTACAGTGGTGACTCTAACCATAAAATTATTATCGTTGCTGCT
CCATAACTGTAATTTTGTTACTGTTATGAATCGTAATGAAAATATTATTG
GAGGCCGGTTTTTTTGTCCCACCGCCCGCCCAACCTCTGCTATATAGAGA
GTTGTTTGGTATTGTGGGCTCCGAGAAAAATAGAATTGGGAGTGGCGGAG
GTCGGATCTTTTCATTATTTGGCCATGGTTAACATCCCTGTTTTTATGTG
GTGCGTTACTTCAAAGTAAATATCTCTGCTGCCCCCCCTTGTTTCCTTTT
CTCACCCCCTGTTTGCTCATTGTTACCCCTTCTTCCCCTTTTTCTCATTT
TTTTACACACTTTTTCTTCCCCTACCACTTTTTTTAATTCCTTTACCTCA
CTCGCGCGATTTTTTATTTATATTTTTTTTTAATTGTAATTCATACTAAT
TTCTTATATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_f02.g1 MSMg01no067_f02.g1 CHROMAT_FILE:
MSMg01no067_f02.g1 PHD_FILE: MSMg01no067_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:23 2005
         (247 letters)



>mm_chr2_92007875_92008521
          Length = 647

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctaaggcctctgatgggctagcaccaggctgagaaggaccaggaaagtctttgagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tcctaaggcctctgatgggctagcaccaggctgagaaggaccaggaaagtctttgagaat 287

                                                                       
Query: 61  ggatgactcctgaggcgagggactccagagaaaagcaactctctccctctgtgacataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ggatgactcctgaggcgagggactccagagaaaagcaactctctccctctgtgacataaa 227

                                                                       
Query: 121 gagaagtcagggtctaccctatagaccagtggttctcagcctacctaattctgcaactct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gagaagtcagggtctaccctatagaccagtggttctcagcctacctaattctgcaactct 167

                                                                       
Query: 181 tggttacagtggtgactctaaccataaaattattatcgttgctgctccataactgtaatt 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tggttacagcggtgactctaaccataaaattattatcgttgctgctccataactgtaatt 107

              
Query: 241 ttg 243
           |||
Sbjct: 106 ttg 104


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)