BAC Information

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BAC

Clone NameMSMg01-067G01
Chromosome2 (Build37)
Map Location 76,729,137 - 76,729,316
singlet/doubletsinglet
Overlap geneTtn
Upstream geneAgps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3
Downstream gene2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067G01.T7 (MSMg01no067_g01.b1)MSMg01-067G01.TJ (MSMg01no067_g01.g1)
ACCAG292127AG292128
length714715
length of high quality
(start - end)
180 (133 - 312)245 (71 - 315)
definitionCHROMAT_FILE: MSMg01no067_g01.b1 PHD_FILE: MSMg01no067_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:28 2005CHROMAT_FILE: MSMg01no067_g01.g1 PHD_FILE: MSMg01no067_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATTGCTATGCCCAGACATTATCTGAAAATGTTGTTTGGTACTTTG
CTCCACTGACAATCTTAGTTTTCTCATGAAACCAGGCAATAGTGATGGGA
GACGATCCAGCTACTTTACATTCTAAGATGCAAGAGGTGCCCAGGACACC
ACCAGTATCCTTCAGTCTTCGTGTGAAAGAGGGAGGGACCATTCGGTCTG
CATGAGGGAAGACATATGACTTGTGGTGACTTGAAGGGACAGAAGAGATA
TGAAAGAAGGAAAGTTCATAATATAAATTTGCATATGCGAGCAGATGCAA
ATGCCAGAACTATTCTGATCACATCCGCCACAGCTGTGCAACTGCGTTTT
CCAACGTTGTTCTGAATCTGTAAGGTGTAGGTGCCTGGATCTTTCCTTTC
AACTGAGAGGATTTTGAAGGTAGAGATTTTGTTGGAAAAACTAAATTTGT
GTTTTTTGGCTGCTGCACAAGAAGCTTTCCGTCCCTTATACCATTCAACA
GAGAGATTCCGGAATGGCTTCCCCCCTTAAACTCCCAGGGGTACACGTAT
TCTCCCACAGTCACCGGCATGGACCCGTGCCTTCTCTACATGGACCGGGA
GTCTCGTGAAAAAATACCAGTACTGCGTTTTTTGAAAACCCTAGACCCTT
TCCTTTCCTGGCTA
ATGCTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTTAAAGCCCAAAGGGTTAGCTGTTATT
TTTACGTCTACAAAACTATCCCTATTATGCTTAAAACTAAGTATGCTGGT
TAGTTGTCAGCTTGACACAGACTAGAGTCATCTGGGAAGAGGGAACCTTG
GTGGAAGAATTATCTCCACCAAACTGGCCTACAGGCATGTCTTTGAAACA
TTTCCTTTGATTAATGGTTGTTGTCGGAGGATCAAGGTGAGCTCGGGCAG
TACCATCCCTGGGCAGGTTATCCTAGGTTGCTCAACAAGGAAAGCCAGTA
GCAGTGTTTTTTTTTGCCCCCCCGCCCCCCCTCCTGCCTGGAGCTCCTGC
TTTGGCTTCGCTCAGTGATGGACTTTAATCTCTAAGATGTTATAGACTCT
TTCCTCCAGAGGTTGCTTCGGGTCTTGTTTTATTGCAACAACAAAAATCC
TTCTAGAACATCTAATAAAGGGACTCCTGTTAAAATCCCTCTCGCCTCAC
TTAAAAGGGTTTCGGTGCATGTTTGAGCTAATCCTAGTGAATAAAAACCT
GATCTTCTCCTTTAACGTGCCCTAGCTTTATCATTTGGCTTTCTTAATGC
ACAGTATAACCGTGTTGTGGGTTTCCTAACAATTTGACCCTTTTGAGAAT
AAGACGGTGCCACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_g01.b1 MSMg01no067_g01.b1 CHROMAT_FILE:
MSMg01no067_g01.b1 PHD_FILE: MSMg01no067_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:28 2005
         (180 letters)



>mm_chr2_76728937_76729516
          Length = 580

 Score =  333 bits (172), Expect = 5e-96
 Identities = 178/180 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcaatagtgatgggagacgatccagctactttacattctaagatgcaagaggtgccc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggcaatagagatgggagacgatccagctactttacattctaagatgcaagaggtgccc 260

                                                                       
Query: 61  aggacaccaccagtatccttcagtcttcgtgtgaaagagggagggaccattcggtctgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggacaccaccagtatccttcagtcttcgtgtgaaagagggagggaccattcggtctgca 320

                                                                       
Query: 121 tgagggaagacatatgacttgtggtgacttgaagggacagaagagatatgaaagaaggaa 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 tgagggaagacatatgacttgtggtgacttgaaaggacagaagagatatgaaagaaggaa 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)