BAC Information

Click to search

BAC

Clone NameMSMg01-067N13
Chromosome2 (Build37)
Map Location 63,876,395 - 63,876,688
singlet/doubletsinglet
Overlap geneFign
Upstream geneKcnh7, EG667257
Downstream geneLOC620544, LOC667291, Grb14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067N13.T7 (MSMg01no067_n13.b1)MSMg01-067N13.TJ (MSMg01no067_n13.g1)
ACCAG292483AG292484
length702707
length of high quality
(start - end)
316 (41 - 356)246 (76 - 321)
definitionCHROMAT_FILE: MSMg01no067_n13.b1 PHD_FILE: MSMg01no067_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:04 2005CHROMAT_FILE: MSMg01no067_n13.g1 PHD_FILE: MSMg01no067_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGATT
CACTTTACTTCCGGCTGTTCTGAGGCTACTATAGGTCACAAACAATGGAC
TTGAGTTTTTCAAGTTGTCTCTAAAGTGAAAATCTAGGATAAGAAATTGT
AAGGCAGAATGGTGTCAGGCATCTTGAGTTTCAGCATTTAAGAGGAAGGA
ACTCAATAATTCGAAGCCATCTTTTACAGAGAACTCAAGATCAGTTACAC
GGAGACCATGTGTCAAAGGTAACACAAAAGGTCTGGATGTGTAGTTCAGT
GGTAGGGTATTTCCAGGGATGCCCAAGGGCCCCAAGTTCAATGCCTCACA
CAATGTGTATTTATAGAGAACGCCACCATGGACTGCAGAAATGCACAGAG
GATATTGGAACATATTCCCCACTATATATAAAACTGTGTGTATTTGTTTA
CAACATGTTAAAGGATAGTCAATACATAATTCAAGAAAAAGAATTATTGC
CTTACACTGTATTAGTAACCCAGATATTTGAAAATGCTTTCAGGTTATAT
TTGGAAGCTGACAAATATTCATTTTGGGGCAAAACCTGCTGTACAACAAG
TTGGCTAAACTCATTTGATAATTTGAAACATTTGGACACATACTTCAAGC
TCCTCCTTTTCTGAAGATCTTGAGCATGATGTTCAAGGGACGACTCCTCA
TC
AACGATATAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAATAAATCCTGTCATATTAGTAA
GTTTCAATACTTTGCCTAAAAAATATGTTGCAGAAAAGACACTCTTATAA
AATGTATTTTGAAAACTAGACATTTACATGATATAGACTGTAACTAGATC
ACTATCTCTCACTCTGTACAAGAGTTAATTCCAAATGCATCAAATAGTTT
AAGGCAAAAATCCCTGAAAATTAGAAACTGTAGAGAAATCAAAGGAATAA
CTTTCTAAATATGAATTCAGTTACTCATTAAGACCAAGAACTGACCAGTG
GGATGGCATGTATTTTTTTAAGCCCCCCCCACCCAAATATACAATAACCT
GAATTAAAAATATAAAACTATAAGAAAAGAAAGACAATATTGTGGAGAAG
ATCTTTTTCAGCTATTAATGTGGTTATTAAATAGATAATAGACCTATTCA
TCATATTTTATATACAGAATTATTATAAATACTAAAGTATAACAAAATCC
AATCATTAACCGGTAAATAGGTTGAATGAATGCCACCTTTACACAAGATA
TAAAAACACCCCCTAATTATATTTTATAAAGCTGACCAGATAAATTTCTA
TTTAACCTCTTATATGCCCTTTTCTCCTAATTTTCGTAATCATTATTGTT
TCGACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_n13.b1 MSMg01no067_n13.b1 CHROMAT_FILE:
MSMg01no067_n13.b1 PHD_FILE: MSMg01no067_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:04 2005
         (316 letters)



>mm_chr2_63876173_63876888
          Length = 716

 Score =  569 bits (294), Expect = e-166
 Identities = 294/294 (100%)
 Strand = Plus / Plus

                                                                       
Query: 23  ggctgttctgaggctactataggtcacaaacaatggacttgagtttttcaagttgtctct 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ggctgttctgaggctactataggtcacaaacaatggacttgagtttttcaagttgtctct 282

                                                                       
Query: 83  aaagtgaaaatctaggataagaaattgtaaggcagaatggtgtcaggcatcttgagtttc 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aaagtgaaaatctaggataagaaattgtaaggcagaatggtgtcaggcatcttgagtttc 342

                                                                       
Query: 143 agcatttaagaggaaggaactcaataattcgaagccatcttttacagagaactcaagatc 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 agcatttaagaggaaggaactcaataattcgaagccatcttttacagagaactcaagatc 402

                                                                       
Query: 203 agttacacggagaccatgtgtcaaaggtaacacaaaaggtctggatgtgtagttcagtgg 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agttacacggagaccatgtgtcaaaggtaacacaaaaggtctggatgtgtagttcagtgg 462

                                                                 
Query: 263 tagggtatttccagggatgcccaagggccccaagttcaatgcctcacacaatgt 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tagggtatttccagggatgcccaagggccccaagttcaatgcctcacacaatgt 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)