BAC Information

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BAC

Clone NameMSMg01-068D05
Chromosome2 (Build37)
Map Location 154,740,520 - 154,900,448
singlet/doubletdoublet
Overlap genea, Ahcy
Upstream geneRya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2
Downstream geneItch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068D05.T7 (MSMg01no068_d05.b1)MSMg01-068D05.TJ (MSMg01no068_d05.g1)
ACCAG292750AG292751
length700729
length of high quality
(start - end)		243 (69 - 311)216 (75 - 290)
definitionCHROMAT_FILE: MSMg01no068_d05.b1 PHD_FILE: MSMg01no068_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:33 2005CHROMAT_FILE: MSMg01no068_d05.g1 PHD_FILE: MSMg01no068_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,740,520 - 154,740,762)(154,900,233 - 154,900,448)
sequence
TTTGCGGCGCTACACGACTCACTATAGTTTCGGATGCGCGGAATTCTCCC
TTTTTTTTCCATGAGAATCCCTTTCTCCTATAACTTCAGTAGGACAACAT
TTTTTTTTTCGCCACTGAACTTCTATAGCACCTTATTTATGCTTCTTTTA
TCATTTGTCATGATGTCTTTAGCATCACAGCCCCCCCCCCTTTATATAGA
AACTTAAGGTCTGACCTAATTCACAAGCCATAAACATCTATAATGCACAT
TTTTTATCATCTTAAAGTTACGTTTTATAATATTTAAAGACTCATTTTTA
AAAAGATGTCGCGTTATATACTTTTTTGTGCATGAGTCCTTGTCTGCAGT
TGTTGTGAATTTCCTGCGAACTACTGGGTGGCCACTGGGTCCTGATCTCT
GATGATCCCTATAAGAGCATGGTGACTCTCAACCAATGAGCTATTTCCTT
GGCCTCTATAAGGTTAATTTTGTATATCCATCGCATATTATCTGCGTGAA
TATTACTGCTATCCGATCTAAGTCTGTCTCTCCCTAAAGTCTCGTTATCT
GCTCTTGTAAAATGCTTTATAACTCTGTCGACGTTATCACATTTTCTTCC
CCTGTTGATCTTTTCCATAATTTATTTATTCTGATATCCCCCGGCTTGTT
TGATTCTTTTTTTTTTCTTTCTTCAGTTCCTCTAATCCTCATTCATGTTG


CACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCCACATCTGCCTTGTTTTGACCTCTGATTCACT
GGCTGGACGGATGGGAGAAGAACCGCCTCTCTCCACGCTCCCTCCTAGTC
GAGTGCCAGGGGTCCAAAGGCCACAGTGCACAAAATTTATGATTTTTGAG
GCAGAGATCAGCCTTGCTCCCGCTCCGCTCAACGCCTCGAGCTAGGCTCC
GCCCCTAAGTTTCAGCCCCCAGCAGGTTCATGAATATTCAAATAAGAATA
TATTTAAAGACGCCGGCGCCAGGCGTATATTCCTGCCCCGCGCCGCCCGG
CCCCCTTCACTGATTTCATCAGTCCTAGCGGAAGCGCCGCCAGTATGTCT
GATATACTGCCCTATAAAGTCTGTGAGTCTCATTGGTCTCAGTCCTCCGT
GGCGTACTCGTTTCCCGTCTTGTGTTTGTTGTCCGTACCGATCCTGCGTC
CTTGTTCAGGTGTCGTCTTCCTCTTCGTCCCGTTTATCCCTTATAAACGC
TGGCTCTGGCTCCCATTTTGTCCGTCTTATTGTATTCTTTATCGTCGCCT
CATACCTTTCACTGCCTACACGACCGCGTTATTCCCATTCTTCGTTCTGC
TTCTGCGCTTATGCTTCCCTGCTCCTTCACCTTCCGTCCTTTGTCTTTAT
TTCCTGATTCTCCTGCCTCTTGCCTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_d05.b1 MSMg01no068_d05.b1 CHROMAT_FILE:
MSMg01no068_d05.b1 PHD_FILE: MSMg01no068_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:33 2005
         (243 letters)



>mm_chr2_154740320_154740962
          Length = 643

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctttctcctataacttcagtaggacaacattttttttttcgccactgaacttctatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctttctcctataacttcagtaggacaacattttttttttcgccactgaacttctatag 260

                                                                       
Query: 61  caccttatttatgcttcttttatcatttgtcatgatgtctttagcatcacagcccccccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccttatttatgcttcttttatcatttgtcatgatgtctttagcatcacagcccccccc 320

                                                                       
Query: 121 cctttatatagaaacttaaggtctgacctaattcacaagccataaacatctataatgcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttatatagaaacttaaggtctgacctaattcacaagccataaacatctataatgcac 380

                                                                       
Query: 181 attttttatcatcttaaagttacgttttataatatttaaagactcatttttaaaaagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttttatcatcttaaagttacgttttataatatttaaagactcatttttaaaaagatg 440

              
Query: 241 tcg 243
           |||
Sbjct: 441 tcg 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no068_d05.g1 MSMg01no068_d05.g1 CHROMAT_FILE:
MSMg01no068_d05.g1 PHD_FILE: MSMg01no068_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:33 2005
         (216 letters)



>mm_chr2_154900033_154900648
          Length = 616

 Score =  418 bits (216), Expect = e-121
 Identities = 216/216 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgccttgttttgacctctgattcactggctggacggatgggagaagaaccgcctctctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tgccttgttttgacctctgattcactggctggacggatgggagaagaaccgcctctctcc 357

                                                                       
Query: 61  acgctccctcctagtcgagtgccaggggtccaaaggccacagtgcacaaaatttatgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 acgctccctcctagtcgagtgccaggggtccaaaggccacagtgcacaaaatttatgatt 297

                                                                       
Query: 121 tttgaggcagagatcagccttgctcccgctccgctcaacgcctcgagctaggctccgccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tttgaggcagagatcagccttgctcccgctccgctcaacgcctcgagctaggctccgccc 237

                                               
Query: 181 ctaagtttcagcccccagcaggttcatgaatattca 216
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ctaagtttcagcccccagcaggttcatgaatattca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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