BAC Information

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BAC

Clone NameMSMg01-068D09
Chromosome2 (Build37)
Map Location 128,946,807 - 128,947,314
singlet/doubletsinglet
Overlap geneRpo1-2
Upstream geneAcoxl, Bcl2l11, LOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738
Downstream geneChchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068D09.T7 (MSMg01no068_d09.b1)MSMg01-068D09.TJ (MSMg01no068_d09.g1)
ACCAG292758AG292759
length703714
length of high quality
(start - end)
519 (34 - 552)506 (74 - 579)
definitionCHROMAT_FILE: MSMg01no068_d09.b1 PHD_FILE: MSMg01no068_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:34 2005CHROMAT_FILE: MSMg01no068_d09.g1 PHD_FILE: MSMg01no068_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGCCGCTATACGACTCCTATAGTCAGAGGATCCGCGGAATTCCTGATC
TTTCCCAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTT
CTGCATCCAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATA
TAGTGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCATTCC
TGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGATCTT
GGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATATTCATA
AGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTT
AGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACTTT
CTACTTCTATCTTGTGAAAAAGTTTGTGCAGAACTGGAATTAGATCTTCT
TTGAAGGTCCGATAGAACTCTGCACTAAACCCGTCTGGTCCTGGGCTTTT
TTTGGCTGGGAGACTATTTATAACTGCTTCTATTTCTTTAGGGGATATGG
GACTGTTTAAAAGGTCAACTTGATCCTGATTCAACTTTGGTACCTGGTAC
CTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTTCCAGTTTTGTCGATT
ATAGCCTTTTGTACAAGGAACTGATGGTGTTTTGGATTTCTTCCGGATCT
GTT
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGCATGGCAGCTACTGGAAAGTAAG
AGGCATTTAGAAAAAAAGTGGGGACCACCCAAGAAGAGCCTTTACTCTGC
ACACATGTTGAGTTTAGACCTTTGGTGGGAACTGAATGGCTCATGATGCA
TGAGACTGAGCCAAGTAGCTTAACTGAGACTAAGAACCTAGTTAAACAGC
AGTCAAGACTGTAACAGCCCATGCAGAGAGGCCCATCAGTGCTAAGAGAT
GACACAGTAATTACTGGAGACACACAGCAAACATAACTCACTCAAGAAAC
ACTACAGTCAATGGATAGCAACCCCGGGACGCCCTGATGCTGGAACAGTA
GCTTTACAGCACCCGCTATATCAAGCTCAACAGACACAGGAAAATATACC
TTAGTGAATACAGAACAAATACCTGGAACGCATAAACTGGTAGCAAGAAC
AAACAACCCAACAAACAACCTACCCAGCAGAAGGCCTAGACTGAAAGACA
ACCTGAGTTCAGGCCCCAGAACCAGCATATAGTCAGGAAGAGAGACTACT
CCACAGAGCTGCCCTCTGACCTCCACCCTTATGCTGCCCTCCGACCTCCA
CCCTCATGCTGCCCTCTGACCTCCACCCGCATGTTGTCCCTCCGACCTCC
ACTCTTATGCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_d09.g1 MSMg01no068_d09.g1 CHROMAT_FILE:
MSMg01no068_d09.g1 PHD_FILE: MSMg01no068_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:34 2005
         (506 letters)



>mm_chr2_128946607_128947514
          Length = 908

 Score =  936 bits (484), Expect = 0.0
 Identities = 502/508 (98%), Gaps = 2/508 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcatggcagctactggaaagtaagaggcatttag-aaaaaaagtggggaccacccaa 59
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 708 acagcatggcagctactggaaagtaagaggcatttagaaaaaaaagtggggaccacccaa 649

                                                                       
Query: 60  gaagagcctttactctgcacacatgttgagtttagacctttggtgggaactgaatggctc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gaagagcctttactctgcacacatgttgagtttagacctttggtgggaactgaatggctc 589

                                                                       
Query: 120 atgatgcatgagactgagccaagtagcttaactgagactaagaacctagttaaacagcag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 atgatgcatgagactgagccaagtagcttaactgagactaagaacctagttaaacagcag 529

                                                                       
Query: 180 tcaagactgtaacagcccatgcagagaggcccatcagtgctaagagatgacacagtaatt 239
           ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 528 tcaagactgcaacagcccatgcagagaggcccatcagtgctaagagctgacacagtaatt 469

                                                                       
Query: 240 actggagacac-acagcaaacataactcactcaagaaacactacagtcaatggatagcaa 298
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 actggagacacaacagcaaacataactcactcaagaaacactacagtcaatggatagcaa 409

                                                                       
Query: 299 ccccgggacgccctgatgctggaacagtagctttacagcacccgctatatcaagctcaac 358
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ccccaggacgccctgatgctggaacagtagctttacagcacccgctatatcaagctcaac 349

                                                                       
Query: 359 agacacaggaaaatataccttagtgaatacagaacaaatacctggaacgcataaactggt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 agacacaggaaaatataccttagtgaatacagaacaaatacctggaacgcataaactggt 289

                                                                       
Query: 419 agcaagaacaaacaacccaacaaacaacctacccagcagaaggcctagactgaaagacaa 478
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 288 agcaagaacaaacaacccaacaaacaacccacccagcagaaggcctagactgaaagacaa 229

                                       
Query: 479 cctgagttcaggccccagaaccagcata 506
           ||||||||||||||||||||||||||||
Sbjct: 228 cctgagttcaggccccagaaccagcata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 908
Length adjustment: 10
Effective length of query: 496
Effective length of database: 898
Effective search space:   445408
Effective search space used:   445408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)