BAC Information

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BAC

Clone NameMSMg01-068E01
Chromosome2 (Build37)
Map Location 5,902,849 - 5,903,030
singlet/doubletsinglet
Overlap geneUpf2
Upstream gene1110017I16Rik, Mcm10, Optn, Ccdc3, LOC100040292, Camk1d, LOC666599, Cdc123, Nudt5, Sec61a2, Dhtkd1
Downstream geneLOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387, Cugbp2, LOC100040659
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068E01.T7 (MSMg01no068_e01.b1)MSMg01-068E01.TJ (MSMg01no068_e01.g1)
ACCAG292790AG292791
length794823
length of high quality
(start - end)
274 (120 - 393)182 (140 - 321)
definitionCHROMAT_FILE: MSMg01no068_e01.b1 PHD_FILE: MSMg01no068_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:37 2005CHROMAT_FILE: MSMg01no068_e01.g1 PHD_FILE: MSMg01no068_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTGTTTTGTTTTCCCTTTTCCATTTCTCATTTTTTTCCCTCTCCCTC
TNCCNNNCCATTTNNNNGAAGTATCTXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCTCCCATGCTGTTTTAGAG
CATACTGCAATCACTAAGTCCCTTTACTCCTAAATACAGATATATGGATA
GATAGACGGAGAGATAGATACAAATTTAGATAAATATATATGTATATATA
TAAATTTAGATAAAATACATTTATAAACAGATAAATATGGATATATATTT
CCTTTTATAAAAGAGTAAAATGATGACAATCAAGAGGCTTACAGAAATAT
AACACTGTCTTAGTCAGGGCTTCTATTCCTGTACAAACATCATGATCTAA
AAGCACTTGCCCAGGAAAGGTTTTACTTCGCTTATTTTTTTATACCGCCC
CTCACCACTAAAGGAAGCCAGGATTGGTACTCACGCCGTTCTTGAAACAA
GAAATGATGCATAGGTCGTGTAGGGATGCTTTTTACTGGCTTGCCTCTCC
TGTTTTGCTCATCCTGCTCTCTTATAGAACCAATATTACCGGCTCCTTAG
ATGGCCCCCCTTTTAATGGGTCTTTCCTCTCATGTACCTCTTTTTGTACA
CCAGGTCTTTACAACTGCTCATCTTTGTGTTTTCCTTTTCTTCCCCTGTT
TTCTTTCTCGCCCTTCTGCATACATACTCTCGCTCTTTAGGGTTATCCCC
TGCCCCCTTACTTTTTATTTGTTCATACACCTCTCTTTAGTCTT
CCCCCCCTTCCCCTTCTTCCCCCCCTTCTCCTCCCCTTTTTTNTANANTT
TAGGAATTTNTTGAACTATGAAGNTGGTXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAGCCACGT
CTACCCTTTTCCTTACTGATAAAAGAGAAAAATTTCTATATAAAAAAATG
AAGTAAACAGAGGAAATAAATACTAATAGAAAATATCCTTCTAATTAAAC
ATCCTAACAAGGAATGGAAAGATGGCTCAGCAGTTAGCACTCACTGCTCT
ACTAGAGGACAGGAACTTCAGTTTCCAGAATGCACCTTAAACAGCCCACA
ACTACCTGGAACTCCAGCTCTAGGGAATCCAACACCTTTTCCTGGCCCTT
GTAGGTACCTGCACATATGCATAGTGTGTTTTCACCCCCCCCCCCACCCG
TACTATGAAATAAACGCCCTTAAAAGAAGCCCGTTGCTAAAAAAAAAAAA
AGTTGTTGGAGAGGTGTTGACCATTGCCTACAGATTTTGCCCTGGCCCTG
CATTATGATTCATTCCATATTGCCAAAATTAGTATCTTATATCCACATCC
ACCATTGGTCGTTTGCATTTTATCCTTTTCCCCATTTTCCCCCCTCTTTT
TTTCCGGTTAGCCTTTCGGGTAGGACTTTTTCTGATTTCTGGATGGATTT
ATCTTGTGTCCCCATCACACCGAAATCTTTCAACGCCATATTACCTGCGC
ACTCATACTTTTACCCCACAACTTTTGTTTCCCCCATAAACTTTCGGCAT
ATAACCCTATTCTCTCACTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_e01.g1 MSMg01no068_e01.g1 CHROMAT_FILE:
MSMg01no068_e01.g1 PHD_FILE: MSMg01no068_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:37 2005
         (182 letters)



>mm_chr2_5902710_5903291
          Length = 582

 Score =  344 bits (178), Expect = 2e-99
 Identities = 181/182 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actagccacgtctacccttttccttactgataaaagagaaaaatttctatataaaaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 actagccacgtctacccttttccttactgataaaagagaaaaacttctatataaaaaaat 262

                                                                       
Query: 61  gaagtaaacagaggaaataaatactaatagaaaatatccttctaattaaacatcctaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagtaaacagaggaaataaatactaatagaaaatatccttctaattaaacatcctaaca 202

                                                                       
Query: 121 aggaatggaaagatggctcagcagttagcactcactgctctactagaggacaggaacttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaatggaaagatggctcagcagttagcactcactgctctactagaggacaggaacttc 142

             
Query: 181 ag 182
           ||
Sbjct: 141 ag 140


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)