BAC Information

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BAC

Clone NameMSMg01-068H20
Chromosome2 (Build37)
Map Location 99,672,627 - 99,672,943
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621386
Downstream geneLOC668702, LOC100042907, LOC241572, LOC668705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068H20.T7 (MSMg01no068_h20.b1)MSMg01-068H20.TJ (MSMg01no068_h20.g1)
ACCAG292972AG292973
length715713
length of high quality
(start - end)
322 (47 - 368)297 (74 - 370)
definitionCHROMAT_FILE: MSMg01no068_h20.b1 PHD_FILE: MSMg01no068_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:56 2005CHROMAT_FILE: MSMg01no068_h20.g1 PHD_FILE: MSMg01no068_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAACTCATAATTTGCGGCGCTAAACGACTCCTATAGGTTGCGGATCCGC
GGAATTCACTCTGTAGACCACCCTGGCCTCGAACTCAGAAATCCGCCTAC
CTCTACCTCCCAAGTCCTGGGATTAAAGGCGTGCACCACCACAGCCCAGC
TAAAATTCACTATTATTAATCTTATTCTAAAACACTTAAATATATCCCAA
ACCTTGTTTTAACTAGTATCATGGCTTCTCTTACCTGAGCCAAATTAGCA
TACAAAAAAACAACAATCTTATAAGAACACTTTTGATCATCATTTATATT
TTTAAACCATATAAATTAAACACTTTATAATAATATTAACTCACCACAAG
TATTCAACACATCATTATATTTTTTCTTTCCCCCGCACCCACAGAGTCAC
CATGTTCCCTCTGCCCACTGTAAGACATTTCATCTAAAAAAATTCCCTGT
GAGACCTAGGAGTCTCTCACCTCCCAGGTCTCTAGTACATTCTAGAGGGT
TCCCCTACCTCCTACCTCCTGAGGTTGCCTGTTTTCATTCTTTTTGTTGA
CCCTCAGGACTTCAATTCTGTTCTCACACCATCTAATACTCGATCATGTT
CCCCTCTTCTCCTTCATATCCCCTTTCTCACCCATGCCCCTCCCTCTCTC
CCCCTTCCTGGGATTGCTTTTTTCTCTCTTCTCAGTGTACTTTGAAGTAT
CCTCCCTTGGAATCC
NAATTCATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCTCGCAATTATATTTCCTTAAGAATAAAGCATCTGC
TTTTGCAGTGGTGAAAGGTAACACATGATTTTAAGACTAGTTCTTGGGAT
ACAAAGGCAGGCAAATCTCCCTGATCTCCAGACCAGTCCGTGTTCCACAG
TGAGTTCTAAAGCAGGGAGAATGAGGCCTTGTCTAAAACAAAACAAACAA
AACAAAACAAAGGAAAACAAAACAAAATAAACAACATAAAACAAAGCAAA
TCTAGGCAAATTAAAAATTTAAAAGTTTATTGATCTGCTTTTATCTTTTT
ATATCAGACATTGGTCATGGTATTTGTTGGCGCACATCCTAAATGGCTCA
ATAAATCTAATCTTCTTTTTTACAAGCAATATTTTTGATATTTTACTTGT
TTCATTTTTCAACTGTATACAGTGACTAAATATTAAAAGAGTTCTATTCC
TTGGTTAAAAACATTTGTCTTATTTTATTTTTATTTTAGTATTTGGAAGG
TATCTCTCAAATTCAAGAATGTTTTTGACACTGTGTTTTGAAAAACAACA
AATGAATTTTAAAATGTCCTTCTAGAAAATATTGATAAAACTATTTAATC
AGTAGTGTGTTTACCCTTCAAGCTGTGATCTGTTCATCTGTGGCATTCTT
ATCCCTTTGACGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_h20.b1 MSMg01no068_h20.b1 CHROMAT_FILE:
MSMg01no068_h20.b1 PHD_FILE: MSMg01no068_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:56 2005
         (322 letters)



>mm_chr2_99672423_99673144
          Length = 722

 Score =  567 bits (293), Expect = e-166
 Identities = 311/317 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcactctgtagaccaccctggcctcgaactcagaaatccgcctacctctacctcc 64
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcactctgtagaccaggctggcctcgaactcagaaatccgcctacctctacctcc 264

                                                                       
Query: 65  caagtcctgggattaaaggcgtgcaccaccacagcccagctaaaattcactattattaat 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 caagtcctgggattaaaggcgtgcaccaccacagcccagctagaattcactattattaat 324

                                                                       
Query: 125 cttattctaaaacacttaaatatatcccaaaccttgttttaactagtatcatggcttctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttattctaaaacacttaaatatatcccaaaccttgttttaactagtatcatggcttctc 384

                                                                       
Query: 185 ttacctgagccaaattagcatacaaaaaaacaacaatcttataagaacacttttgatcat 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttatctgagccaaattagcatacaaaaaaacaacaatcttataagaacacttttgatcat 444

                                                                       
Query: 245 catttatatttttaaaccatataaattaaacactttataataatattaactcaccacaag 304
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 445 catttatatttttaaaccatataaattaaacactttaaaagaatattaactcaccacaag 504

                            
Query: 305 tattcaacacatcatta 321
           |||||||||||||||||
Sbjct: 505 tattcaacacatcatta 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)