BAC Information

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BAC

Clone NameMSMg01-069I18
Chromosome2 (Build37)
Map Location 111,841,339 - 111,841,540
singlet/doubletsinglet
Overlap geneLOC433463
Upstream geneLOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309
Downstream geneOlfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069I18.T7 (MSMg01no069_i18.b1)MSMg01-069I18.TJ (MSMg01no069_i18.g1)
ACCAG293779AG293780
length701707
length of high quality
(start - end)
311 (37 - 347)199 (55 - 253)
definitionCHROMAT_FILE: MSMg01no069_i18.b1 PHD_FILE: MSMg01no069_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:20 2005CHROMAT_FILE: MSMg01no069_i18.g1 PHD_FILE: MSMg01no069_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:20 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TATTTGCGGCGCTNTACGACTCCTATATTCAGAGATCCGCGGAATTCATC
TGGCTGTCAATTTCTTTATCCTAGCGAATTCCCAAGAATGACACTTAGAA
ACCAAAATTTATTTTACAGCTTCACTGTAACATCTGGGCAGTATTGGCCT
ATTAGTCCTCTAAGCTAATCTGGCTACTCCTAGTCAAATTCCTAGGATAC
CTGCATTTTAATATTGGTCTGACTCTTTGGACTTCAGTTATGTTTCTATG
GACTCTTTCCAAATCCATTCATTGTGGCTCAAATTGAAATTCCTCCTCCT
TTCTCTCGTCTACTAGAAGACCTGTCCTATTCTCTCTTCTGCCCAACCAT
TATTTGATCAGCATTTCCTGACTCAGGAGATAATAAATAGCAAGAACTGT
TTACACAAACTCATAGGAGTTTTTTTTTATGCTTCTATTAGATATTTTCT
TAATTTACTTTTCAAACGTTATCCTCTTTCCTGGTTTCCCTTCTGAAAAC
CCCCTATGTCCTCTTTCCTCTCTCTGTTTACCTACCCACTCACTCCTGAT
TCCTGTTCCTGTCATTCCTCTACTCTGCATTTTACATCCTTTTAGTATCT
ACGTCCTCCTCTCCCATTGATATTTGACTTTTTAATCCTTTGCTGTGTAT
TCTTCTGTATATCTGAGCTCTTACCTTTTTTGTCCTTTTGTCCTTGTTAT
C
GCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGTCTGGCTCTCCCACTTAGAGACTGCCGTGTGTCCTGCACTTTGA
GGACCCAGGTGGGGGGGGCGCTCCTCTTCTTTAGTTCACTTGGGCAACTC
TGGTGCTGACGCAGTGTAAGTTGAGCATCGTAGCCACCAACTCTGGAAGA
TCAAAGTCATGCTTCCAGCCCCAGTCCTTCCGAGCATTGCTGTCATCTAG
AATCATGGGCCAGCTCTCCGCTATGGCTTGTCGGAGGGGATCCCCGCCTC
TTTTTTTCTGGAAGCCAGGAGCATGTTTGCGGAGCGTCTGTTGCATCGCT
TCCCGGGCCAAGACCATGGGGATTAAGTTGTAGGTTCGCATGGACAGCCC
CTCGAAAATGCATTCAAAGACCCGCGGGGGGGGGCTTGACCTGCCCCTGA
TGTACCTCATTGCCTGCCCGTTGCCCGTTCCCGACTTTGCCTCCAAAATG
CGCCGTTCTTTGTTCGCTCGCCGTAATACTTGCCAATGTACTCATCTGTT
TCTCTTCTTCGTTTTGTATTTCCTCCCTCTGATCCCCATCTCCTATCCTC
CTTCCCTCCCTTTTTTTTGTCTTCTCTTTCCCCCATGATTCTTTTCCCCT
TTCCCCTTTGTTCTTTCTATTTTTCTCTACTCCTCCGTTTTTTTTTTTTT
CCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_i18.g1 MSMg01no069_i18.g1 CHROMAT_FILE:
MSMg01no069_i18.g1 PHD_FILE: MSMg01no069_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:20 2005
         (199 letters)



>mm_chr2_111841139_111841740
          Length = 602

 Score =  352 bits (182), Expect = e-102
 Identities = 196/202 (97%), Gaps = 3/202 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtctggctctcccacttagagactgccgtgtgtcctgcactttgaggacccaggt---g 57
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||   |
Sbjct: 402 agtctggctctcccacttagagactgccgtgtgtcctgcactttgaggacaaaggtgggg 343

                                                                       
Query: 58  gggggggcgctcctcttctttagttcacttgggcaactctggtgctgacgcagtgtaagt 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 342 gggggggcgctcctcttctttagttcacttgggcaactctggtgctgacgcagtggaagt 283

                                                                       
Query: 118 tgagcatcgtagccaccaactctggaagatcaaagtcatgcttccagccccagtccttcc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tgagcatcgtagccaccaactctggaagatcaaagtcatgcttccagccccagtccttcc 223

                                 
Query: 178 gagcattgctgtcatctagaat 199
           ||||||||||||||||||||||
Sbjct: 222 gagcattgctgtcatctagaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 602
Length adjustment: 8
Effective length of query: 191
Effective length of database: 594
Effective search space:   113454
Effective search space used:   113454
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)