Query= MSMg01no069_l03.b1 MSMg01no069_l03.b1 CHROMAT_FILE:
MSMg01no069_l03.b1 PHD_FILE: MSMg01no069_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:31 2005
(244 letters)
>mm_chr2_46976800_46977448
Length = 649
Score = 435 bits (225), Expect = e-126
Identities = 241/249 (96%), Gaps = 5/249 (2%)
Strand = Plus / Plus
Query: 1 atgtcagcttgttcatttcaacgaaatcttaatttctgcaaaccacatcattgaacatca 60
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 atgtcagcttggtcatttcaacgaaatcctaatttctgcaaaccacatcattgaacatca 260
Query: 61 ttaatggcacagataaag-----agtcagcaaaccatataactaaacggtaaaatgtact 115
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaatggcacagataaagtaaagagtcagcaaaccatataactaaacggtaaaatgtact 320
Query: 116 tgatagtaaagttctacctttcatttgtaacttaaaaatactttaactgatatgatctag 175
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacagtaaagttctacctttcatttgtaacttaaaaatactttaactgatatgatctag 380
Query: 176 tgacgacatacacacacacacacactctgtttgtttgttatcttaaaagtattcgttctt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacgacatacacacacacacacactctgtttgtttgttatcttaaaagtattcgttctt 440
Query: 236 aatgaaaca 244
|||||||||
Sbjct: 441 aatgaaaca 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 649
Length adjustment: 9
Effective length of query: 235
Effective length of database: 640
Effective search space: 150400
Effective search space used: 150400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no069_l03.g1 MSMg01no069_l03.g1 CHROMAT_FILE:
MSMg01no069_l03.g1 PHD_FILE: MSMg01no069_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:31 2005
(411 letters)
>mm_chr2_47100278_47101088
Length = 811
Score = 704 bits (364), Expect = 0.0
Identities = 399/412 (96%), Gaps = 4/412 (0%)
Strand = Plus / Minus
Query: 1 attgcaaagaaaaagcaaacaattttatttcttaaaatatactggcacctaaattatgca 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 610 attgcaaagaaaaagcaaacaattttatttcttaaaaaatactggcacctaaattatgca 551
Query: 61 tatgtactaaactctccactttgtggtggcaagtgaatcccatcaaaaatgtatagattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tatgtactaaactctccactttgtggtggcaagtgaatcccatcaaaaatgtatagattt 491
Query: 121 agaatacattttttagatcatcagaatgactgacacttgcgttgtagtgttttacatttt 180
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 490 agaatacattttttagatcatcagaatgactgacacttgtgttgaagtgttttacatttt 431
Query: 181 tatattccccatggtgagttttaaatattgcccttaagtagggtagaatttacactgatt 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 430 tatattccccatggtgagttttaaatatcgcccttaagtagggtagaatttacactgatt 371
Query: 241 ccaaactccttacactacagccattcagtttcacaatttccttgtaatgttcataactgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 370 ccaaactccttacactacagccattcagtttcacaatttccttgtaatgttcatatctgt 311
Query: 301 gaacaccagaaatcaaagtagatatg--ggttgaagttttctagaaaagtattattattt 358
||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||
Sbjct: 310 gaacaccagaaatcaaagtagat--gctggttgaagttttccagaaaagtattattattt 253
Query: 359 cttggtgatggtgcttatgagcatcttccctttctcaaatactacccaatat 410
||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 252 cttggtgatggtgcttatgagtgtcttccctttctaaaatactacccaatat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
