BAC Information

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BAC

Clone NameMSMg01-069L22
Chromosome2 (Build37)
Map Location 143,314,101 - 143,314,392
singlet/doubletsinglet
Overlap geneLOC668915
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneLOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069L22.T7 (MSMg01no069_l22.b1)MSMg01-069L22.TJ (MSMg01no069_l22.g1)
ACCAG293930AG293931
length693702
length of high quality
(start - end)
247 (68 - 314)292 (74 - 365)
definitionCHROMAT_FILE: MSMg01no069_l22.b1 PHD_FILE: MSMg01no069_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:35 2005CHROMAT_FILE: MSMg01no069_l22.g1 PHD_FILE: MSMg01no069_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAATTTGCGGCGCTATACGACTCCTATTTTCAGAGATCCGCGGATTCC
TTCTTTTTTCATCAACCATCATCATGAGATATGCTTTTAAATCCAGGTCT
ACCTTTTCAGGTGTGTTACGGTGTCCCGGATTGGGCGAAGTGGGCGTTCT
GGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGATTCTTAC
GTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTATAGTTGTC
TTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCTCTATCAGCAGG
CGTGGGAGACAAGTTCTCTTCTCTGAGTTTCAGTGGTCAGAGCAGTCTCT
GTAGGTATTTTCTCCTCTCTCAGGGAAGGTGTACAGTTATCTGGTGTTTG
GACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGGATCTTTCCCAGAA
GCTGTGTTGCTTTGGCCAGTAAGGTGGCCAGTTGTCTGGAGTCGAAGATG
TCGCAGCCTCAGAAGCTCTGTGGCTCTTGCCGGGAAGGTGGCTGGTTGTC
TGGAGCTGAGGATGGTGCCGCCCCAGAATCTCTGCGACTCTCTCGTCCGT
CCCAGAAACAGCTGGCACTCTGTATTCCACACGGCCACTCGTGTAGTCTG
TCCTCCGCGGAGTCCTGGAGCCAAGAAGGCTCCCGCCGGCGCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAACCAGGGCTACACAGAAAAA
CCCTGTCTCGAAAAACAAAAACAACACAAAACAAAACAAAAATCGGAATC
GTTAAAGAAAAAGCAGTAAATATACTCTTACCAGGACAAAAGCCCATGTC
TTTCCCTGTGAAGCAAAGACTATGTAAAAGTGCAAGAATATTTGTGATCC
ATGTACCTATGTGATCAGGACACAATTCTGGGTCACACGAAGAAGACATA
GCATAAGCGAATCAGTGAGAAAACGGTTGGGGACATGCACAGTCAGTCCT
AGAGAAGGACACAGGATTGGCTGATGCACACATGAAATTGCACCCCAGCT
TACAAGAAATCAGGAAATTCTAATCCAAACCTTAACATCAAGGGAATTAC
ACGGGAAGACTCACTGTGCACAGTTTGTGTCTTAACCTGGCTGGTCGGTG
CATGGTCCTCCCTTTACTATTGTATACTTTGTTTAGAGCTTTATATACAC
ATATACACATGTCTATATAAAACATCCATCTATGTAGATGTACATTTTGT
ACACATTGGATTTCCTTAAATAAATTTAGCACTAAGCTCCTTGCATAGCT
TACTCGCATATCATGAGCACTTCAGGATTCACACTGTATGGGAACAATGA
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_l22.g1 MSMg01no069_l22.g1 CHROMAT_FILE:
MSMg01no069_l22.g1 PHD_FILE: MSMg01no069_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:35 2005
         (292 letters)



>mm_chr2_143313833_143314524
          Length = 692

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacaaccagggctacacagaaaaaccctgtctcgaaaaacaaaaacaacacaaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 560 caggacaaccagggctacacagaaaaaccctgtctcgaaaaacaaaaacaaaacaaaaca 501

                                                                       
Query: 61  aaacaaaaatcggaatcgttaaagaaaaagcagtaaatatactcttaccaggacaaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaacaaaaatcggaatcgttaaagaaaaagcagtaaatatactcttaccaggacaaaagc 441

                                                                       
Query: 121 ccatgtctttccctgtgaagcaaagactatgtaaaagtgcaagaatatttgtgatccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccatgtctttccctgtgaagcaaagactatgtaaaagtgcaagaatatttgtgatccatg 381

                                                                       
Query: 181 tacctatgtgatcaggacacaattctgggtcacacgaagaagacatagcataagcgaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tacctatgtgatcaggacacaattctgggtcacacgaagaagacatagcataagcgaatc 321

                                                               
Query: 241 agtgagaaaacggttggggacatgcacagtcagtcctagagaaggacacagg 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agtgagaaaacggttggggacatgcacagtcagtcctagagaaggacacagg 269


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)