BAC Information

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BAC

Clone NameMSMg01-070K07
Chromosome2 (Build37)
Map Location 155,717,697 - 155,873,679
singlet/doubletdoublet
Overlap gene2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4
Upstream geneEif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik
Downstream geneSpag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070K07.T7 (MSMg01no070_k07.b1)MSMg01-070K07.TJ (MSMg01no070_k07.g1)
ACCAG294615AG294616
length681682
length of high quality
(start - end)		368 (33 - 400)425 (74 - 498)
definitionCHROMAT_FILE: MSMg01no070_k07.b1 PHD_FILE: MSMg01no070_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:47 2005CHROMAT_FILE: MSMg01no070_k07.g1 PHD_FILE: MSMg01no070_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,717,697 - 155,718,062)(155,873,305 - 155,873,679)
sequence
GGCGCAATACGACTCCTATATTCAGAGAATCCGCGGAATTCTTCATTTAT
CCCAAAATCCTGTAGTCTGTTAATACACCTGCCCACTGAGGTTTAAAAGG
CACAGATTTTTTTTCAGATCATAAACTTTTAACTATATCAACATGAGGTG
AGGTTGTTGGGGTTTCACAGAACAGCTTGTTCTATAGCCATTGTAAGACA
ATGAGCAGCTCAATGGGCCGCTGGGCTCAAAAGGTCATACATAGAAAATG
AAGGAACTCTCAGGCCGGAGAGACGGCTCAGTGGCTAAGGGTATTTACTG
ATTGCTCTTCTAGAGGTCCTGAGTCCAATTCCCAGCAACCACATGGTGGC
TCACAACTATCTATAATTGGATCTGATTCCCTCTTCTGGGTGTGTAAAGA
TAGAACGCCTACATAGAAAAGGAGGAGGAGGAGGAGGAGAAGGAAGAGGA
GGAGTAGGAATAACATCCTTTTCTCACCTATTCCTTATCAACTAACCCTT
ATTCCACCCTTTTCTCTCACCCCACCTTTTTCCTTATTCTTGTACATTTT
TATAATTTCTCCACTTTTTCTTTATCCTCTCCCCCTTCTTTCTCTTTTTT
AATTACTCACCCAACTCCCCTTCTTCACTTTATTACTATATATTACTTTC
CCAACAATCACATCACTTTTATCTATCTTCT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXGGGCGAGCTGAATGAGCCTGTCGTGCC
TAACCTCCTCTCGCTGCTCTAACCTTTCTCATCCCAGTACTTCTTGTTCG
AATTTCATGAGACTCGGCTTCATCTCCAAGACTTGCTGCTGGAGATAACT
GTGAGTGGGAAAGCAGATTCAAGTCAGGAAAGGGAGGTATCGAGCTGGGC
ATTTGGGTGACTGAGACAGGAAAATCGCCATGAGTTCAAGGCCCAGCTAG
GGCTATAGACTGAGAGTCTTAAAGGTGGACAGAGAGAAAGATGCCAAAGC
AGCAGGACTTAACCCTTCTCTCCCCAGGCTTTCCACTCGCAGACTCTCCC
GTTTATGGCCACCAGGATAGGGACTTTCAGGATGGACTTGGGGATGGCCT
TGGACCAGCCAGGTATTAATCCCCTCCTCTCTATTTATATGAACAAATTA
CCTGAGTTCTGGCCAGTGGACTAACTTCGAAGACAGCCGTCTCTTGTGAA
TGCTCACCTTTTTTGTATGGTGGTTCTCCCTGCTCCAACCCCAGTCATTG
CCCAACATCCTGGATTTGTGGCCCCTTAGATGTCTCCTCCACTCCCCGTC
CTCTTTCCTCTGGCCTTAGAAGGCCACTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_k07.b1 MSMg01no070_k07.b1 CHROMAT_FILE:
MSMg01no070_k07.b1 PHD_FILE: MSMg01no070_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:47 2005
         (368 letters)



>mm_chr2_155717495_155718262
          Length = 768

 Score =  685 bits (354), Expect = 0.0
 Identities = 363/366 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcttcatttatcccaaaatcctgtagtctgttaatacacctgcccactgaggttt 62
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcttcatttatttgaaaatcctgtagtctgttaatacacctgcccactgaggttt 262

                                                                       
Query: 63  aaaaggcacagattttttttcagatcataaacttttaactatatcaacatgaggtgaggt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaaaggcacagattttttttcagatcataaacttttaactatatcaacatgaggtgaggt 322

                                                                       
Query: 123 tgttggggtttcacagaacagcttgttctatagccattgtaagacaatgagcagctcaat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgttggggtttcacagaacagcttgttctatagccattgtaagacaatgagcagctcaat 382

                                                                       
Query: 183 gggccgctgggctcaaaaggtcatacatagaaaatgaaggaactctcaggccggagagac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gggccgctgggctcaaaaggtcatacatagaaaatgaaggaactctcaggccggagagac 442

                                                                       
Query: 243 ggctcagtggctaagggtatttactgattgctcttctagaggtcctgagtccaattccca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggctcagtggctaagggtatttactgattgctcttctagaggtcctgagtccaattccca 502

                                                                       
Query: 303 gcaaccacatggtggctcacaactatctataattggatctgattccctcttctgggtgtg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcaaccacatggtggctcacaactatctataattggatctgattccctcttctgggtgtg 562

                 
Query: 363 taaaga 368
           ||||||
Sbjct: 563 taaaga 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no070_k07.g1 MSMg01no070_k07.g1 CHROMAT_FILE:
MSMg01no070_k07.g1 PHD_FILE: MSMg01no070_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:47 2005
         (425 letters)



>mm_chr2_155872855_155873679
          Length = 825

 Score =  702 bits (363), Expect = 0.0
 Identities = 372/375 (99%)
 Strand = Plus / Minus

                                                                       
Query: 51  ctttctcatcccagtacttcttgttcgaatttcatgagactcggcttcatctccaagact 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 ctttctcatcccagtacttcttgttcgaatttcatgagactcggcttcatctccaagact 766

                                                                       
Query: 111 tgctgctggagataactgtgagtgggaaagcagattcaagtcaggaaagggaggtatcga 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tgctgctggagataactgtgagtgggaaagcagattcaagtcaggaaagggaggtatcga 706

                                                                       
Query: 171 gctgggcatttgggtgactgagacaggaaaatcgccatgagttcaaggcccagctagggc 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gctgggcatttgggtgactgagacaggaaaatcgccatgagttcaaggcccagctagggc 646

                                                                       
Query: 231 tatagactgagagtcttaaaggtggacagagagaaagatgccaaagcagcaggacttaac 290
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tatagactgagagtcaaaaaggtggacagagagaaagatgccaaagcagcaggacttaac 586

                                                                       
Query: 291 ccttctctccccaggctttccactcgcagactctcccgtttatggccaccaggataggga 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ccttctctccccaggctttccactcgcagactctcccgtttatggccaccaggataggga 526

                                                                       
Query: 351 ctttcaggatggacttggggatggccttggaccagccaggtattaatcccctcctctcta 410
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 525 ctttcaggatggacttggggatggccttggaccagccaggtattaaacccctcctctcta 466

                          
Query: 411 tttatatgaacaaat 425
           |||||||||||||||
Sbjct: 465 tttatatgaacaaat 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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