BAC Information

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BAC

Clone NameMSMg01-070L22
Chromosome2 (Build37)
Map Location 154,154,765 - 154,155,108
singlet/doubletsinglet
Overlap genenone
Upstream geneKif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915
Downstream geneCdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070L22.T7 (MSMg01no070_l22.b1)MSMg01-070L22.TJ (MSMg01no070_l22.g1)
ACCAG294693AG294694
length743701
length of high quality
(start - end)
226 (40 - 265)348 (68 - 415)
definitionCHROMAT_FILE: MSMg01no070_l22.b1 PHD_FILE: MSMg01no070_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:55 2005CHROMAT_FILE: MSMg01no070_l22.g1 PHD_FILE: MSMg01no070_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATACGCGGAATTCCAG
CTCCTTTATCAGGCTAAAACAGGAGGGTCACAGTTCAAGGTTTGCCTGAG
CTACAGAGCAAGTTCAAAGCCATCCTATGCAATTTCACAAGGTCCCACCT
CAAAATAAAAAGTAAACCAAAAGAGCTGGAGATGGAGCTCAGTGGTAAAG
CACCTGCCTACATGTGTGAGGTCTGGGATCAATCCTCAGGCAAGGAGAGA
GGGAGGGAGGGAGGGAGGTAGTTTTTTTCTTTTCCCTTTCTTCTTTTTTC
TGCCCCTTCTATTTTTTTTTATCTCATCATTCCCAATTTCTCTAATTTTT
TAACGCCTTATTTTTCTCCTTTTTTACGATTGTTATATTCCTTTTATTTT
TTTTATTTATTTTTCTTCTTTTTTTTGTATTGTTTTCTTTCTTTGTCTTT
TTCTTTTTTTTCCTTTTTTCTATTATTTTTGTTTTTAATTTCTTTTGTCT
TTTTTTTCTCTTTTTTTACTTTCTTTTATTGTTTTTATTTTTTTTTTTTC
TTTTCTCTTTGTTTTTTTTTTATGTTTTTTTTTTTGTGTGTTCTTTTTTT
CCTCTATTTTATTTTTTCTATTTTGTTGTCTCTTTCTTGTTTTTTCTTTT
TTCTTTATTCTTTGTTTTTTTTGTTTTATATATTTTTTGTGTCTCTATAT
CTAATACTTTTATTCTTTCTGTTTTGTTTTTTATTTTCCCTAC
ATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACTCAGCTCAGGTGATGAAGACCAACCACTGC
TCACTACAAATCAAAGAAAACCATTAATCTTCAATGTCCTAAAGAAATGT
CCTTTGCTGTGGTACTTCAAACCATGAAGACCCTTTGGCTGTATGGTCAC
ATGAGGAACTTGCTGTCTGGATAGTCTTATTGCTTGAAGCTTTCTAGCCA
AGGCCCTCCAGGAACACCTATAGAAGTAGAGTGCAGGGCTGTGAGTGAGC
CAGGCAGCCGCTTCCCCATCCACCTGCATCCTTCTTACTAGGGAAACTCC
GTACTACACAGGGGAAGACAAGACCAGTGAGTTTATGTGCACGCATCTTG
GGTATCCTGCACGAGGGCTAGGACAGTGAGTACTGCTCATAGAATGACAT
TGGCTACACACCAGTAGCACATTTGCATAGCTGTTTTGGTCAACTTTTGT
TGTTGCTGTTTAATTCACCATGCATCTTCTAAAAGAAAACTGCCCCTCCT
CAAATTGTCGACTGATACCATAGTATTGTAAATAACGATGACTTGCACCC
TCTGAAAAAATCCTTGTGTTTTTACCAAAATTCACTTCCCTCTTTCCATT
AAGCATCTGCTAGTCTGACCTGCAAAGAAAATGCCTTTGAATCCAGAAAA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_l22.g1 MSMg01no070_l22.g1 CHROMAT_FILE:
MSMg01no070_l22.g1 PHD_FILE: MSMg01no070_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:55 2005
         (348 letters)



>mm_chr2_154154565_154155312
          Length = 748

 Score =  634 bits (328), Expect = 0.0
 Identities = 340/344 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactcagctcaggtgatgaagaccaaccactgctcactacaaatcaaagaaaaccattaa 60
           |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 544 cacttagctcaggtgatgaagaccaatcactgctcactacaaatcaaagaaaaccattaa 485

                                                                       
Query: 61  tcttcaatgtcctaaagaaatgtcctttgctgtggtacttcaaaccatgaagaccctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tcttcaatgtcctaaagaaatgtcctttgctgtggtacttcaaaccatgaagaccctttg 425

                                                                       
Query: 121 gctgtatggtcacatgaggaacttgctgtctggatagtcttattgcttgaagctttctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gctgtatggtcacatgaggaacttgctgtctggatagtcttattgcttgaagctttctag 365

                                                                       
Query: 181 ccaaggccctccaggaacacctatagaagtagagtgcagggctgtgagtgagccaggcag 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ccaaggccttccaggaacacctatagaagtagagtgcagggctgtgagtgagccaggcag 305

                                                                       
Query: 241 ccgcttccccatccacctgcatccttcttactagggaaactccgtactacacaggggaag 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ccgcttccccattcacctgcatccttcttactagggaaactccgtactacacaggggaag 245

                                                       
Query: 301 acaagaccagtgagtttatgtgcacgcatcttgggtatcctgca 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 acaagaccagtgagtttatgtgcacgcatcttgggtatcctgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)